Module parser 

Genome JSON parser.

Parses FEAGI 2.1 genome JSON format into runtime data structures.

Genome Structure (v2.1)

{
  "genome_id": "...",
  "genome_title": "...",
  "version": "2.1",
  "blueprint": {
    "cortical_id": {
      "cortical_name": "...",
      "block_boundaries": [x, y, z],
      "relative_coordinate": [x, y, z],
      "cortical_type": "IPU/OPU/CUSTOM/CORE/MEMORY",
      ...
    }
  },
  "brain_regions": {
    "root": {
      "title": "...",
      "parent_region_id": null,
      "coordinate_3d": [x, y, z],
      "areas": ["cortical_id1", ...],
      "regions": ["child_region_id1", ...]
    }
  },
  "neuron_morphologies": { ... },
  "physiology": { ... }
}

Copyright 2025 Neuraville Inc. Licensed under the Apache License, Version 2.0

Structs

GenomeParser

Genome parser

ParsedGenome

Parsed genome data ready for ConnectomeManager

RawBrainRegion

Raw brain region from genome

RawCorticalArea

Raw cortical area from blueprint

RawGenome

Raw genome JSON structure for deserialization

Functions

string_to_cortical_id

Convert a string cortical_id to CorticalID Handles both old 6-char format and new base64 format CRITICAL: Uses feagi-data-processing types as single source of truth for core areas