List of all items
Structs
- bgzf::BgzfReader
- bgzf::BgzfWriter
- bgzf::BlockOffset
- bgzf::GziIndex
- bgzf::ParallelBgzfReader
- borrowed::SequenceRef
- format::CompressionLevel
- index::FaiRecord
- index::FastaIndex
- index::IndexedFasta
- paired::Pair
- paired::PairedReader
- reader::FastxReader
- reader::ReaderBuilder
- reader::Records
- record::Sequence
- seq::BaseCounts
- stats::SeqStats
- writer::FastxWriter
- writer::WriterBuilder
Enums
- error::Error
- error::ParseError
- format::Compression
- format::Format
- paired::PairedWriter
- qual::QualityEncoding
- seq::Alphabet
Traits
Functions
- bgzf::gzi_path
- bgzf::is_bgzf
- index::fai_path
- paired::mate_stem
- parallel::par_fold
- parallel::par_for_each
- parallel::par_for_each_file
- parallel::par_map
- parallel::par_map_chunks_file
- parallel::par_stats
- parallel::par_stats_file
- parallel::split_file
- qual::encode
- qual::error_probability
- qual::expected_errors
- qual::fraction_at_least
- qual::mean_quality
- qual::mean_score
- qual::probability_to_score
- qual::score
- qual::scores
- qual::trim_ends
- qual::trim_mott
- qual::trim_sliding_window
- read_all
- read_all_from
- reader::from_stdin
- reader::open
- seq::canonical_kmer
- seq::complement
- seq::complement_rna
- seq::gc_content
- seq::hamming_distance
- seq::kmers
- seq::make_uppercase
- seq::n50
- seq::nx
- seq::reverse_complement
- seq::reverse_complement_in_place
- seq::reverse_complement_into
- seq::reverse_complement_rna
- seq::rna_to_dna
- seq::translate
- seq::translate_codon
- stats_of
- write_all
- writer::create
- writer::stdout
Type Aliases
- error::Result
- index::BoxedSource
- paired::BoxedPairedReader
- parallel::ChunkReader
- reader::BoxedReader
- writer::BoxedWriter