List of all items

Structs

• config::FastQCConfig
• modules::adapter_content::AdapterContent
• modules::basic_stats::BasicStats
• modules::duplication_level::DuplicationLevel
• modules::gc_content::PerSequenceGCContent
• modules::kmer_content::KmerContent
• modules::n_content::NContent
• modules::overrepresented_seqs::OverRepresentedData
• modules::overrepresented_seqs::OverRepresentedSeqs
• modules::per_base_quality::PerBaseQualityScores
• modules::per_base_sequence_content::PerBaseSequenceContent
• modules::per_sequence_quality::PerSequenceQualityScores
• modules::per_tile_quality::PerTileQualityScores
• modules::sequence_length_distribution::SequenceLengthDistribution
• report::charts::ChartColor
• report::charts::ChartLayout
• report::charts::line_graph::LineGraphData
• report::charts::quality_boxplot::QualityBoxPlotData
• report::charts::tile_graph::TileGraphData
• report::templates::classic::ClassicTemplate
• report::templates::modern::ModernTemplate
• sequence::Sequence
• sequence::bam::BAMFile
• sequence::casava::NameFormatError
• sequence::fast5::Fast5File
• sequence::fastq::FastQFile
• sequence::group::SequenceFileGroup
• utils::base_group::BaseGroup
• utils::phred::PhredEncoding
• utils::quality_count::QualityCount

Enums

• config::TemplateName
• modules::ModuleStatus

Traits

• config::LimitsExt
• modules::QCModule
• report::templates::ReportTemplate
• sequence::SequenceFile

Functions

• modules::create_modules
• report::archive::create_zip_archive
• report::archive::extract_zip
• report::charts::approx_text_width
• report::charts::find_optimal_y_interval
• report::charts::format_y_label
• report::charts::line_graph::render_line_graph
• report::charts::png_to_data_uri
• report::charts::quality_boxplot::render_quality_boxplot
• report::charts::render_centered_title
• report::charts::strip_crisp_edges
• report::charts::svg_footer
• report::charts::svg_header
• report::charts::svg_line
• report::charts::svg_rect_filled
• report::charts::svg_rect_stroked
• report::charts::svg_text
• report::charts::svg_to_png
• report::charts::tile_graph::render_tile_graph
• report::charts::xml_escape
• report::html::format_java_date
• report::html::generate_html_report
• report::html::write_chart
• report::html::write_chart_svg
• report::html::write_default_html_table
• report::html::write_escaped
• report::templates::create_template
• report::text::write_fastqc_data
• report::text::write_summary
• runner::run
• sequence::bam::open_sequence_file
• sequence::casava::get_casava_basename
• sequence::casava::get_casava_groups
• sequence::casava::get_nanopore_basename
• utils::dna::complement_base
• utils::dna::reverse_complement
• utils::format::java_format_double
• utils::phred::detect
• utils::quality_count::calculate_offsets

Type Aliases

• config::Limits

Constants

• RUST_VERSION
• VERSION
• VERSION_BANNER
• report::charts::BOLD_WIDTH_SCALE
• report::charts::CHART_HEIGHT
• report::charts::CHART_WIDTH
• report::charts::LINE_COLOURS
• utils::base_counts::BASE_INDEX
• utils::base_counts::IDX_A
• utils::base_counts::IDX_C
• utils::base_counts::IDX_G
• utils::base_counts::IDX_N
• utils::base_counts::IDX_T