Struct fastobo::visit::IdCompactor

pub struct IdCompactor { /* fields omitted */ }

A visitor that will compact identifiers in an OBO document.

Usage

The compactor will follow the rules from the OBO specification:

• if the document declares an IDSpace prefix p that maps to an Url u, URL identifiers that can be factorized as {u}{v} will be replaced by Prefixed identifiers {p}:{v}
• if the document does not declare an IDSpace p', URL identifiers that can be factorized as http://purl.obolibrary.org/obo/{p'}_{id} will be replaced by Prefixed identifiers {p'}:{id}.

Example

let mut doc = OboDoc::from_str(
"[Term]
id: http://purl.obolibrary.org/obo/BFO_0000055
")).unwrap();

IdCompactor::new().visit_doc(&mut doc);
assert_eq!(doc.to_string(),
"[Term]
id: BFO:0000055
");

* [IdDecompactor](./struct.IdDecompactor.html) that does the opposite.

Methods

impl IdCompactor

pub fn new() -> Self

Trait Implementations

impl VisitMut for IdCompactor

fn visit_header_frame(&mut self, header: &mut HeaderFrame)

fn visit_ident(&mut self, id: &mut Ident)

fn visit_class_ident(&mut self, id: &mut ClassIdent)

fn visit_doc(&mut self, doc: &mut OboDoc)

fn visit_entity_frame(&mut self, frame: &mut EntityFrame)

fn visit_header_clause(&mut self, clause: &mut HeaderClause)

fn visit_ident_local(&mut self, prefix: &mut IdentLocal)

fn visit_ident_prefix(&mut self, prefix: &mut IdentPrefix)

fn visit_import(&mut self, import: &mut Import)

fn visit_instance_clause(&mut self, clause: &mut InstanceClause)

fn visit_instance_frame(&mut self, frame: &mut InstanceFrame)

fn visit_instance_ident(&mut self, id: &mut InstanceIdent)

fn visit_iso_date(&mut self, date: &mut IsoDateTime)

fn visit_naive_date(&mut self, date: &mut NaiveDateTime)

fn visit_namespace_ident(&mut self, id: &mut NamespaceIdent)

fn visit_property_value(&mut self, pv: &mut PropertyValue)

fn visit_prefixed_ident(&mut self, id: &mut PrefixedIdent)

fn visit_quoted_string(&mut self, string: &mut QuotedString)

fn visit_relation_ident(&mut self, id: &mut RelationIdent)

fn visit_subset_ident(&mut self, id: &mut SubsetIdent)

fn visit_synonym(&mut self, syn: &mut Synonym)

fn visit_synonym_scope(&mut self, scope: &mut SynonymScope)

fn visit_synonymtype_ident(&mut self, id: &mut SynonymTypeIdent)

fn visit_term_clause(&mut self, clause: &mut TermClause)

fn visit_term_frame(&mut self, frame: &mut TermFrame)

fn visit_typedef_clause(&mut self, clause: &mut TypedefClause)

fn visit_typedef_frame(&mut self, frame: &mut TypedefFrame)

fn visit_unprefixed_ident(&mut self, string: &mut UnprefixedIdent)

fn visit_unquoted_string(&mut self, string: &mut UnquotedString)

fn visit_url(&mut self, url: &mut Url)

fn visit_xref(&mut self, xref: &mut Xref)

fn visit_xref_list(&mut self, xrefs: &mut XrefList)

impl Clone for IdCompactor

fn clone(&self) -> IdCompactor

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Default for IdCompactor

fn default() -> IdCompactor

Returns the "default value" for a type.

impl Debug for IdCompactor

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.