fastobo_graphs/from_graph/
header.rs

1use std::str::FromStr;
2
3use fastobo::ast::HeaderClause;
4use fastobo::ast::HeaderFrame;
5use fastobo::ast::Ident;
6use fastobo::ast::LiteralPropertyValue;
7use fastobo::ast::NaiveDateTime;
8use fastobo::ast::NamespaceIdent;
9use fastobo::ast::PrefixedIdent;
10use fastobo::ast::PropertyValue;
11use fastobo::ast::QuotedString;
12use fastobo::ast::RelationIdent;
13use fastobo::ast::ResourcePropertyValue;
14use fastobo::ast::UnquotedString;
15
16use super::FromGraph;
17use crate::constants::property::dc;
18use crate::constants::property::obo_in_owl;
19use crate::constants::property::rdfs;
20use crate::error::Result;
21use crate::model::BasicPropertyValue;
22use crate::model::Meta;
23
24impl FromGraph<Meta> for HeaderFrame {
25    fn from_graph(meta: Meta) -> Result<Self> {
26        let mut frame = Self::new();
27
28        if let Some(ref def) = meta.definition {}
29
30        if let Some(ref iri) = meta.version {}
31
32        // QUESTION: is this semantically correct?
33        for comment in meta.comments {
34            frame.push(HeaderClause::Remark(Box::new(UnquotedString::new(comment))));
35        }
36        for pv in meta.basic_property_values {
37            frame.push(HeaderClause::from_graph(pv)?);
38        }
39
40        // ... TODO ... //
41
42        Ok(frame)
43    }
44}
45
46impl FromGraph<BasicPropertyValue> for HeaderClause {
47    fn from_graph(pv: BasicPropertyValue) -> Result<Self> {
48        match pv.pred.as_str() {
49            obo_in_owl::AUTO_GENERATED_BY => Ok(HeaderClause::AutoGeneratedBy(Box::new(
50                UnquotedString::new(pv.val),
51            ))),
52            obo_in_owl::CREATION_DATE | dc::DATE | obo_in_owl::HAS_DATE => {
53                let dt = NaiveDateTime::from_str(&pv.val)?;
54                Ok(HeaderClause::Date(Box::new(dt)))
55            }
56            obo_in_owl::HAS_DEFAULT_NAMESPACE => {
57                let ns_id = NamespaceIdent::from_str(&pv.val)?;
58                Ok(HeaderClause::DefaultNamespace(Box::new(ns_id)))
59            }
60            obo_in_owl::HAS_OBO_FORMAT_VERSION => Ok(HeaderClause::FormatVersion(Box::new(
61                UnquotedString::new(pv.val),
62            ))),
63            obo_in_owl::NAMESPACE_ID_RULE => Ok(HeaderClause::NamespaceIdRule(Box::new(
64                UnquotedString::new(pv.val),
65            ))),
66            obo_in_owl::SAVED_BY => {
67                Ok(HeaderClause::SavedBy(Box::new(UnquotedString::new(pv.val))))
68            }
69            rdfs::COMMENT => Ok(HeaderClause::Remark(Box::new(UnquotedString::new(pv.val)))),
70            other => {
71                let rel = RelationIdent::from_str(&other)?;
72                let pv = match Ident::from_str(&pv.val) {
73                    Ok(id) => PropertyValue::from(ResourcePropertyValue::new(rel, id)),
74                    Err(_) => PropertyValue::from(LiteralPropertyValue::new(
75                        rel,
76                        QuotedString::new(pv.val),
77                        Ident::from(PrefixedIdent::new("xsd", "string")),
78                    )),
79                };
80                Ok(HeaderClause::PropertyValue(Box::new(pv)))
81            }
82        }
83    }
84}
fastobo_graphs/from_graph/header.rs

fastobo_graphs/from_graph/
header.rs
