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Fastars

Ultra-fast QC and trimming for short and long reads.

Fastars provides efficient FASTQ processing with:

• Quality control metrics collection
• Adapter and quality trimming
• Read filtering
• JSON and HTML report generation

Example

use fastars::pipeline;

// Pipeline usage will be documented once implemented

Modules

cli

Command-line interface definitions.

correction

Overlap-based error correction for paired-end reads.

filter

Filtering module for read filtering.

io

I/O module for FASTQ reading and writing.

merge

Paired-end read merging module.

pipeline

Pipeline module for coordinating processing stages.

qc

Quality control module for collecting read metrics.

report

Report generation module.

trim

Trimming module for adapter and quality trimming.

umi

UMI (Unique Molecular Identifier) processing module.