Function analyze_with_parse_result 

pub fn analyze_with_parse_result(
    config: &ResolvedConfig,
    modules: &[ModuleInfo],
) -> Result<AnalysisOutput, FallowError>

Run the analysis pipeline using pre-parsed modules, skipping the parsing stage.

This avoids re-parsing files when the caller already has a ParseResult (e.g., from fallow_core::extract::parse_all_files). Discovery, plugins, scripts, entry points, import resolution, graph construction, and dead code detection still run normally. The graph is always retained (needed for file scores).

Errors

Returns an error if discovery, graph construction, or analysis fails.