Module datasources 

Data sources for Exon. Datasources module.

This module contains the various datasources that are supported by Exon. Generally a user of this library should not need to use this module directly, but rather use the [ExonSessionExt][crate::session_context::ExonSessionExt] trait to load data.

Modules

bam

BAM module. Data source for BAM files.

bcf

BCF module. BCF data source.

bed

BED module. BED data source.

bigwig

BigWig module.

cram

CRAM module.

exon_listing_table_options

Exon listing table options.

fasta

FASTA module.

fastq

FASTQ module. FASTQ data source.

fcs

FCS module.

genbank

GenBank module. Genbank Datasource Module

gff

GFF module. GFF Datasource Module

gtf

GTF module. GTF Datasource Module

hmmdomtab

HMMDOMTAB module. A datafusion compatible datasource for HMMER3 domain tabular output files.

mzml

MzML module. Data source for mzML files.

sam

Implementations to adapt SAM files to datafusion.

sdf

SDF module.

vcf

VCF module. VCF data source.

Structs

ExonListingTableFactory

A ListingTableFactory that adapts Exon FileFormats to TableProviders.

Enums

ExonFileType

The type of file.

Traits

ExonFileScanConfig

Extension trait for FileScanConfig that adds whole file repartitioning.

Functions

infer_file_type_and_compression

Infer the file type from the file extension.