Crate enzymeml

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EnzymeML Rust Library

This library provides functionality for working with EnzymeML documents, including:

Modules§

bindings: Language bindings and interfaces for other programming environments
conversion: Conversion functionality Conversion traits and functions for measurement data.
equation: Core equation handling and manipulation
identifiability: Parameter identifiability analysis and profile likelihood computation
info: [Display] implementation for the EnzymeML library Information display module for EnzymeML documents
io: IO functionality
llm: Language model integration for automated EnzymeML document generation and analysis LLM integration module for EnzymeML document generation
macros: Procedural and helper macros
mcmc: Markov Chain Monte Carlo sampling for Bayesian parameter estimation
objective: Objective function definitions and loss calculations for optimization
optim: Optimization algorithms and parameter estimation for enzyme kinetics
plotting: Plotting and visualization functionality
prelude: Commonly used types and functionality re-exported for convenience
simulation: Simulation functionality for enzyme kinetics
suite: EnzymeML Suite EnzymeML Suite integration module
system: ODE functionality used to derive the system of ODEs from the EnzymeML reactions ODE System Generation for EnzymeML Documents
tabular: Tabular data handling
utils: Utility functions
validation: Validation of EnzymeML documents and components
versions: EnzymeML version management and schema definitions

build_base_unit: Helper macro to create a single BaseUnit from prefix and unit tokens
build_reaction
build_unit_name: Helper macro to build unit name from prefix/unit pairs
collect_base_units: Helper macro to collect base units with specified exponent
create_stoich_eq_jit
extract_all: extract_all is a macro that allows for the extraction of nested fields from a struct. It supports accessing single fields, nested fields, and elements within vectors.
inverse_unit: Macro for creating inverse units (1 / unit)
ratio_unit: Macro for creating ratio units (numerator / denominator)
simple_unit: Macro for creating simple units
unit: Main unit macro that delegates to appropriate sub-macros
unwrap_enum
unwrap_list