Crate drug_extraction_cli

Structs

• ColumnInfo
• DataSet
  Struct to hold information about the dataset
• SearchOutput
  Struct to hold search output
• SearchTerm
  Struct to hold search term and metadata

Functions

• clean_text
  Function to remove non-alphanumeric characters from a string keeps hyphens due to their usage in abbreviations/medical terms. Also uppercase for standardization. Example:
• collect_column_info
  Function to collect column info for each column to search Typically ran using the header from the csv reader and is called inside the initialize_dataset function to do this for each target column. Example:
• get_column_info
  Function to get the column index for a given column name Returns an error if the column name is not found Typically ran using the header from the csv reader and is called inside the collect_column_info function to do this for each target column. Example:
• initialize_dataset
  Function to initialize the dataset
• read_terms_from_file
  Function to read in search terms from a csv file Performs cleaning of terms, ignoring metadata column
• run_searcher
• search
  Primary search function