Crate dihardts_omicstools

Omictools

Constant data

Constant data like element masses are provided as CSV-file and gets compiled on build time (see: build.rs).

• Amino acid data is used from: https://proteomicsresource.washington.edu/protocols06/masses.php
• Elements data is used from: https://proteomicsresource.washington.edu/protocols06/masses.php
• Subatomic particles data is used from en.wikipedia.org/wiki/(Proton|Electron|Neutron) (need better source)

Installation

cargo add dihardts_omicstools

Development

Dependencies

• Rust
• OpenSSL (Ubuntu: libssl-dev)

Unit tests

• For testing the taxonomy reader a taxdmp.zip is required. The test is capable of download it by itself and save it to the tmp folder, however if you plan excessive testing over a couple of reboots, download it ones and set the environment variable TAXDMP_ZIP_PATH with the path to the file.

Modules

• biology
  Module containing functions and information for biology
• chemistry
  Module containing functions and information for chemistry and molecules
• mass_spectrometry
  Entities and functions for working with mass spectrometry data
• proteomics
  Module containing functions and definitions for proteomics
• tools
  Functions and extension for external crates