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  • deepbiop-core-0.1.13
    • deepbiop-core 0.1.13
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    • cauliyang
    • Dependencies
      • ahash ^0.8.11 normal
      • anyhow ^1.0 normal
      • arrow ^54.0 normal
      • bstr ^1.11.3 normal
      • candle-core ^0.8.1 normal
      • derive_builder ^0.20 normal
      • flate2 ^1.0.35 normal
      • itertools ^0.14.0 normal
      • lexical ^7.0 normal
      • log ^0.4 normal
      • ndarray ^0.16 normal
      • needletail ^0.6 normal
      • noodles ^0.87.0 normal
      • numpy ^0.23 normal
      • parquet ^54.0 normal
      • pyo3 ^0.23.3 normal
      • pyo3-stub-gen ^0.6.2 normal
      • rayon ^1.10 normal
      • serde ^1.0 normal
      • serde_json ^1.0 normal
      • thiserror ^2.0 normal
      • walkdir ^2.5 normal
      • bio ^2.0 dev
      • tempfile ^3.15 dev
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    • 35.29% of the crate is documented
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deepbiop_core0.1.13

Crate Items

  • Enums
  • Constants
  • Functions
  • Type Aliases

List of all items

Enums

  • error::DPError

Functions

  • kmer::generate_kmers
  • kmer::generate_kmers_table
  • kmer::kmerids_to_seq
  • kmer::kmers_to_seq
  • kmer::seq_to_kmers
  • kmer::seq_to_kmers_and_offset
  • kmer::to_kmer_target_region
  • kmer::to_original_target_region
  • seq::normalize_seq
  • seq::reverse_complement

Type Aliases

  • types::Element
  • types::Id2KmerTable
  • types::Kmer2IdTable
  • types::Matrix
  • types::Tensor

Constants

  • default::BASES
  • default::IGNORE_LABEL
  • default::KMER_SIZE
  • default::QUAL_OFFSET
  • default::VECTORIZED_TARGET