Module aux 

Modules

cell_annotations

data_loading

feature_names

Feature-name kind + canonicalizer hooks for multi-file data alignment.

feature_rows

Canonical feature-row (sparse-matrix row) convention for every modality.

feature_types

The typed feature table that rides beside a mixed-type embedding: {prefix}.feature_types.parquet, string columns feature and type, one row per embedding row in the same order. senna fne and gene-text write it; a consumer that wants only one type of row (senna bge pinning gene rows, say) reads it. The type names are the shared vocabulary.

frozen_features

Load a pre-trained per-gene embedding (and optional per-gene bias) from parquet and strictly intersect its row axis against a caller’s target feature axis.

gene_sets

Gene-set sources for enrichment, reduced to one common term → gene-set form regardless of origin:

logging

Shared logger setup for the workspace.

ontology

Generic OBO ontology (cl-basic.obo, go-basic.obo, …) parsed with fastobo and stored as a petgraph directed graph (edges point child → parent, tagged with the relation kind).