List of all items

Structs

• aux::cell_annotations::CellAnnotations
• aux::cell_annotations::CellTypeMembership
• aux::data_loading::ReadSharedRowsArgs
• aux::data_loading::SparseDataWithBatch
• aux::feature_rows::CountRowMap
• aux::feature_rows::FeatureRow
• aux::frozen_features::FrozenFeatureHost
• aux::frozen_features::FrozenLoadArgs
• aux::gene_sets::GafOpts
• aux::gene_sets::GafRaw
• aux::gene_sets::GeneSets
• aux::gene_sets::Reconciled
• aux::ontology::Ontology
• qc::SqueezeCutoffs
• qc_lib::QcArgs
• qc_lib::QcConfig
• qc_lib::QcReport
• sparse_backend::zarr::SparseMtxData
• sparse_io::CscMatrix
• sparse_io::CsrMatrix
• sparse_io::Tensor
• sparse_io_stack::SparseIoStack
• sparse_io_vector::BackendLocation
• sparse_io_vector::SparseIoVec
• sparse_io_vector::TripletsMatched
• sparse_util::CooTripletsShape
• sparse_util::TripletsShape
• sparse_util::ValuesIndicesPointers
• utilities::name_matching::GeneIndex
• utilities::name_matching::RowTypeFilter

Enums

• aux::feature_names::FeatureNameKind
• aux::feature_names::FeatureNameKindArg
• aux::feature_rows::UnparsedRowPolicy
• aux::ontology::Rel
• qc_lib::Tail
• sparse_io::CsKey
• sparse_io::SparseIoBackend
• sparse_io_vector::ColumnAlignment
• sparse_io_vector::RowAlignment
• sparse_util::IndexPointerType

Traits

• sparse_data_visitors::VisitColumnsOps
• sparse_io::SparseIo
• sparse_util::SparseTripletsTraits

Macros

• sparse_io::array
• sparse_io::azip
• sparse_io::s

Functions

• aux::cell_annotations::build_onehot_membership
• aux::cell_annotations::infer_cell_annotations
• aux::cell_annotations::read_cell_annotations
• aux::cell_annotations::read_membership_proportions
• aux::data_loading::read_data_on_shared_rows
• aux::feature_names::build_locus_overlap_canonical_map
• aux::feature_names::build_locus_overlap_canonicalizer
• aux::feature_names::build_mixed_kind_canonicalizer
• aux::feature_names::parse_locus
• aux::feature_rows::feature_row
• aux::feature_rows::intern_count_rows
• aux::feature_rows::parse_feature_row
• aux::feature_rows::split_count_row
• aux::feature_rows::unit_row
• aux::feature_types::feature_types_path
• aux::feature_types::read_feature_types
• aux::feature_types::write_feature_types
• aux::frozen_features::load_frozen_feature_host
• aux::gene_sets::read_gaf
• aux::gene_sets::read_gmt
• aux::gene_sets::read_membership_pairs
• aux::logging::init_logger
• aux::logging::new_progress_bar
• aux::logging::new_spinner
• column_subset::stream_column_selection
• convert::convert_zarr_to_backend
• convert::try_open_or_convert
• hdf5_io::resolve_backend_file
• hdf5_io::strip_backend_suffix
• qc::collect_column_stat
• qc::collect_column_stat_across_vec
• qc::collect_row_stat
• qc::collect_row_stat_across_vec
• qc::collect_stratified_row_stat_across_vec
• qc::print_nnz_summary
• qc::squeeze_by_nnz
• qc::suggest_nnz_cutoff
• qc_lib::compute_qc
• qc_lib::compute_qc_exempting
• qc_lib::compute_qc_stack
• qc_lib::filter_by_keep
• qc_lib::resolve_rows_by_regex
• qc_lib::robust_outlier_keep
• qc_lib::write_qc_report
• sparse_data_visitors::create_jobs
• sparse_data_visitors::styled_progress_bar
• sparse_io::build_name2index_map
• sparse_io::create_sparse_from_dmatrix
• sparse_io::create_sparse_from_mtx_file
• sparse_io::create_sparse_from_ndarray
• sparse_io::create_sparse_from_triplets
• sparse_io::create_sparse_from_triplets_owned
• sparse_io::create_sparse_streaming_empty
• sparse_io::dmatrix_to_triplets
• sparse_io::ndarray_to_triplets
• sparse_io::open_sparse_matrix
• sparse_io::open_sparse_matrix_by_path
• sparse_io::preload_within_budget
• sparse_io::remove_backend_path
• sparse_io::sparse_io_box_to_arc
• sparse_io::take_subset_indices_names
• sparse_io::take_subset_indices_names_if_needed
• utilities::io_helpers::chunk_elems
• utilities::io_helpers::parse_index_spec
• utilities::io_helpers::parse_name_file
• utilities::io_helpers::read_col_names
• utilities::io_helpers::read_row_names
• utilities::name_matching::compose_id_name
• utilities::name_matching::contains_ignore_ascii_case
• utilities::name_matching::filter_row_indices_by_type
• utilities::name_matching::flexible_name_match
• utilities::name_matching::idf_weight
• utilities::name_matching::make_names_unique
• utilities::name_matching::match_by_substring
• utilities::name_matching::split_id_name
• zarr_io::apply_zip_flag
• zarr_io::extract_zarr_zip
• zarr_io::finalize_output
• zarr_io::finalize_zarr_output
• zarr_io::materialize_writable_backend
• zarr_io::open_zarr_store
• zarr_io::open_zarr_store_rw
• zarr_io::parse_10x_cell_id
• zarr_io::parse_10x_cell_id_flat
• zarr_io::prepare_output
• zarr_io::read_zarr_array_attr
• zarr_io::read_zarr_coordinates
• zarr_io::read_zarr_flat_f32
• zarr_io::read_zarr_flat_u32
• zarr_io::read_zarr_group_attr
• zarr_io::read_zarr_matrix
• zarr_io::read_zarr_ndarray
• zarr_io::read_zarr_numerics
• zarr_io::read_zarr_strings

Type Aliases

• aux::feature_types::FeatureType
• aux::frozen_features::SourceNameMap
• sparse_io::DMatrix
• sparse_io_vector::ColumnNameCanonicalizer
• sparse_io_vector::RowNameCanonicalizer
• zarr_io::ZarrStoreRw

Statics

• aux::logging::MULTI_PROGRESS

Constants

• aux::feature_rows::ALT
• aux::feature_rows::APA
• aux::feature_rows::ATOI
• aux::feature_rows::BAF
• aux::feature_rows::COUNT
• aux::feature_rows::DEPTH
• aux::feature_rows::DISTAL
• aux::feature_rows::EDITED
• aux::feature_rows::M6A
• aux::feature_rows::METHYLATED
• aux::feature_rows::NO_GENE
• aux::feature_rows::PROXIMAL
• aux::feature_rows::SPLICED
• aux::feature_rows::TOTAL
• aux::feature_rows::UNEDITED
• aux::feature_rows::UNMETHYLATED
• aux::feature_rows::UNSPLICED
• aux::feature_types::GENE_TYPE
• aux::feature_types::REGION_TYPE
• aux::feature_types::TERM_TYPE
• aux::feature_types::WORD_TYPE
• aux::gene_sets::COVERAGE_WARN_FRAC
• sparse_io::COLUMN_SEP
• sparse_io::MAX_COLUMN_NAME_IDX
• sparse_io::MAX_ROW_NAME_IDX
• sparse_io::ROW_SEP
• sparse_io::SLAB_BUDGET_BYTES
• sparse_io::TRIPLET_BYTES