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Source - batch_mixing
- Spread batches across cell states.
- bhc
- Bayesian Hierarchical Clustering over K clusters with gene-mass sufficient stats.
- cell_pairs
- Cell-cell interaction counts: a graph over cells paired with the counts
those cells came from.
- collapse_data
- dc_poisson
- Degree-corrected Poisson refinement core.
- feature_coarsening
- Grouping features so a model answers for a group instead of each feature.
- gene_weighting
- Per-gene weighting helpers used by reporting / annotation pipelines.
- hvg
- Highly-variable-gene (HVG) selection.
- nb_dispersion
- Mean-variance trend fit for Negative-Binomial count data.
- normalization
- pseudobulk
- random_projection
- refine_mixed
- Cross-individual likelihood refinement of mixed pseudobulk groups.
- refine_multilevel
- BBKNN-based Poisson refinement over multi-level pb-sample partitions.
- retrieval_impute
- Retrieval-based imputation: pool a sparse reference’s full-feature
counts onto query cells matched in a shared latent space.
- sparse_streaming
- Lock-free parallel streaming pass over a
SparseIoVec that yields a
merged SparseRunningStatistics<f32>. - union_find
- Disjoint-set union (DSU) with union-by-rank and path halving.