Module restriction 

Restriction enzyme recognition, cut-site finding, and in-silico digestion.

Provides a database of common restriction enzymes and functions to find cut sites, digest sequences, and compute fragment sizes.

Structs

CutSite

A located cut site on a sequence.

Fragment

A fragment produced by restriction digestion.

RestrictionEnzyme

A restriction enzyme with its recognition site and cut offsets.

Enums

Overhang

Overhang type produced by a restriction enzyme cut.

Functions

common_enzymes

Return a curated set of ~20 common restriction enzymes.

digest

Digest a sequence with one or more enzymes, returning the resulting fragments.

find_cut_sites

Find all cut sites for a single enzyme on the given sequence.

fragment_sizes

Compute fragment sizes from digestion with one or more enzymes.