Module masking 

Low-complexity and repeat masking for biological sequences.

Implements DUST (DNA), SEG (protein), tandem repeat detection, and soft/hard masking application.

Structs

DustParams

Parameters for the DUST low-complexity filter (DNA).

MaskResult

Result of applying a mask to a sequence.

MaskedRegion

A region identified for masking.

SegParams

Parameters for the SEG low-complexity filter (protein).

TandemRepeatParams

Parameters for tandem repeat detection.

Enums

MaskMode

How to mask identified regions.

MaskSource

Source algorithm that identified a masked region.

Functions

apply_mask

Apply masking to a sequence given a set of regions.

dust

Identify low-complexity regions in a DNA sequence using the DUST algorithm.

find_tandem_repeats

Find tandem repeat regions in a sequence.

mask_dust

Run DUST and apply masking in one step.

mask_seg

Run SEG and apply masking in one step.

seg

Identify low-complexity regions in a protein sequence using the SEG algorithm.