Module codon 

Codon translation, genetic codes, codon usage analysis, and CAI.

Supports 7 NCBI genetic code tables (1, 2, 3, 4, 5, 6, 11) with full translation, start/stop codon queries, codon usage frequency tables, RSCU, CAI, and synonymous/non-synonymous site counting.

Structs

CodonUsage

Codon usage frequency table.

GeneticCode

A genetic code translation table.

Enums

GeneticCodeId

NCBI genetic code table identifier.

SubstitutionClass

Classification of a single-nucleotide substitution between two codons.

Functions

classify_substitution

Classify the substitution between two codons that differ at exactly one position.

codon_adaptation_index

Compute the Codon Adaptation Index of a query sequence against a reference usage table.

count_syn_nonsyn_sites

Count the number of synonymous and non-synonymous sites in a coding sequence.

translate_codon

Translate a single codon using the standard genetic code (NCBI Table 1).

translate_sequence

Translate a nucleotide sequence using the standard genetic code.