Crate cyanea_core 

Shared primitives, traits, and utilities for the Cyanea bioinformatics ecosystem.

cyanea-core provides the foundation that all other Cyanea crates build on:

• Error types — CyaneaError and Result for structured error handling
• Traits — Core abstractions like Sequence, ContentAddressable, Compressible
• Hashing — SHA-256 content addressing for data integrity
• Compression — zstd and gzip with algorithm auto-detection
• Memory mapping — Zero-copy file access (std feature only)

Re-exports

pub use error::CyaneaError;

pub use error::Result;

pub use prob::LogProb;

pub use prob::PhredProb;

pub use bitvec::RankSelectBitVec;

pub use bitvec::WaveletMatrix;

pub use fenwick::FenwickTree;

pub use traits::*;

Modules

bitvec

Rank/select bitvectors and wavelet matrix.

compress

Compression utilities with algorithm auto-detection.

error

Structured error types for the Cyanea ecosystem.

fenwick

Generic Fenwick tree (Binary Indexed Tree) for prefix sums.

hash

SHA-256 hashing for content addressing and data integrity.

mmap

Memory-mapped file access for zero-copy I/O.

prob

Log-space probability types for numerically stable computation.

traits

Core trait definitions for the Cyanea ecosystem.