Module uniprot::uniprot

Data types for the UniProtKB databases.

Modules

• comment
  The different kind of annotations that can be attached to an entry.
• feature_location
• gene
• gene_location
• organism
• protein
• reference

Structs

• Date
  A naive date in YYYY-MM-DD format.
• DbReference
  A database cross-reference.
• Entry
  A UniProtKB entry.
• Evidence
  The evidence for an annotation.
• Feature
  Describes different types of sequence annotations
• Keyword
• Ligand
  Describes a ligand.
• LigandPart
  Describes a ligand part.
• Property
  A single key-value property.
• Sequence
  The sequence of a protein.
• UniProt
  A UniProtKB database.

Enums

• Dataset
  The differents datasets an Entry can be part of.
• FeatureType
  The type of annotations that can be attached to a sequence.
• FragmentType
  A marker indicating whether a protein sequence is fragmented.
• Molecule
  Describes a molecule by name or unique identifier.
• Source
  A reference to the source of the data.

Functions

• parse
  Parse a Uniprot database XML file.
• parse_entry
  Parse a single UniProt entry.

Type Aliases

• Parser
  The parser type for UniProt entries.
• SequentialParser
  The sequential parser type for UniProt entries.
• ThreadedParser
  The threaded parser type for UniProt entries.