uniprot.rs
Rust data structures and parser for the UniprotKB database(s).
🔌 Usage
The uniprot::parse
function can be used to obtain an iterator over the entries
of a UniprotKB database in XML format (either SwissProt or TrEMBL).
extern crate uniprot;
let f = open
.map
.unwrap;
for r in parse
Any BufRead
implementor can be used as an input, so the database files can be streamed
directly from their online location with
the help of an HTTP library such as reqwest
, or
using the ftp
library.
See the online documentation at docs.rs
for more
examples, and some details about the different features available.
📝 Features
threading
(enabled by default): compiles the multithreaded parser that offers a 90% speed increase when processing XML files.
📋 Changelog
This project adheres to Semantic Versioning and provides a changelog in the Keep a Changelog format.
📜 License
This library is provided under the open-source MIT license.