Struct tskit::bindings::tsk_variant_t

#[repr(C)]
pub struct tsk_variant_t {

    pub tree_sequence: *const tsk_treeseq_t,
    pub site: tsk_site_t,
    pub tree: tsk_tree_t,
    pub alleles: *mut *const c_char,
    pub allele_lengths: *mut tsk_size_t,
    pub num_alleles: tsk_size_t,
    pub max_alleles: tsk_size_t,
    pub has_missing_data: bool,
    pub genotypes: *mut i32,
    pub num_samples: tsk_size_t,
    pub samples: *mut tsk_id_t,
    pub sample_index_map: *const tsk_id_t,
    pub user_alleles: bool,
    pub user_alleles_mem: *mut c_char,
    pub traversal_stack: *mut tsk_id_t,
    pub options: tsk_flags_t,
    pub alt_samples: *mut tsk_id_t,
    pub alt_sample_index_map: *mut tsk_id_t,
}

@brief A variant at a specific site.

@rst Used to generate the genotypes for a given set of samples at a given site. @endrst

Fields

tree_sequence: *const tsk_treeseq_t

@brief Unowned reference to the tree sequence of the variant

site: tsk_site_t

@brief The site this variant is currently decoded at

tree: tsk_tree_t

alleles: *mut *const c_char

@brief Array of allele strings that the genotypes of the variant refer to These are not NULL terminated - use allele_lengths for example:. printf("%.*s", (int) var->allele_lengths[j], var->alleles[j]);

allele_lengths: *mut tsk_size_t

@brief Lengths of the allele strings

num_alleles: tsk_size_t

@brief Length of the allele array

max_alleles: tsk_size_t

has_missing_data: bool

@brief If True the genotypes of isolated nodes have been decoded to the “missing” genotype. If False they are set to the ancestral state (in the absence of mutations above them)

genotypes: *mut i32

@brief Array of genotypes for the current site

num_samples: tsk_size_t

@brief Number of samples

samples: *mut tsk_id_t

@brief Array of sample ids used

sample_index_map: *const tsk_id_t

user_alleles: bool

user_alleles_mem: *mut c_char

traversal_stack: *mut tsk_id_t

options: tsk_flags_t

alt_samples: *mut tsk_id_t

alt_sample_index_map: *mut tsk_id_t

Trait Implementations

impl Clone for tsk_variant_t

fn clone(&self) -> tsk_variant_t

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for tsk_variant_t

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Copy for tsk_variant_t