1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
use std::{
    fs::File,
    io::{BufWriter, Result},
    path::Path,
};

use byteorder::WriteBytesExt;

use crate::{
    affine::get_affine_and_translation,
    tractogram::{Point, RefTractogramItem, Tractogram, TractogramItem},
    Affine, Affine4, CHeader, Header, Translation, TrkEndianness,
};

macro_rules! write_streamline {
    ($writer:ident, $streamline:expr, $scalars:expr, $properties:expr) => {
        if $writer.nb_scalars == 0 {
            $streamline.write($writer);
        } else {
            $writer.writer.write_i32::<TrkEndianness>($streamline.len() as i32).unwrap();
            $writer.real_n_count += 1;

            let scalars = $scalars.chunks($writer.nb_scalars);
            for (p, scalars) in $streamline.into_iter().zip(scalars) {
                $writer.write_point(&p);
                $writer.write_f32s(scalars);
            }
        }

        $writer.write_f32s($properties);
    };
    // Fast method, without scalars and properties
    ($writer:ident, $streamline:expr, $nb_points:expr) => {
        $writer.writer.write_i32::<TrkEndianness>($nb_points as i32).unwrap();
        for p in $streamline {
            $writer.write_point(&p);
        }
        $writer.real_n_count += 1;
    };
}

pub struct Writer {
    writer: BufWriter<File>,
    pub affine4: Affine4,
    affine: Affine,
    translation: Translation,
    real_n_count: i32,
    nb_scalars: usize,
}

pub trait Writable {
    fn write(self, w: &mut Writer);
}

impl Writable for Tractogram {
    fn write(self, w: &mut Writer) {
        for item in &self {
            item.write(w);
        }
    }
}

impl Writable for TractogramItem {
    fn write(self, writer: &mut Writer) {
        let (streamline, scalars, properties) = self;
        write_streamline!(writer, streamline, scalars.data.as_slice(), &properties);
    }
}

impl<'data> Writable for RefTractogramItem<'data> {
    fn write(self, writer: &mut Writer) {
        let (streamline, scalars, properties) = self;
        write_streamline!(writer, streamline, scalars, properties);
    }
}

impl<'data> Writable for &'data [Point] {
    fn write(self, writer: &mut Writer) {
        write_streamline!(writer, self, self.len());
    }
}

impl Writer {
    pub fn new<P: AsRef<Path>>(path: P, reference: Option<Header>) -> Result<Writer> {
        let f = File::create(path).expect("Can't create new trk file.");
        let mut writer = BufWriter::new(f);

        let header = match reference {
            Some(r) => r,
            None => Header::default(),
        };
        header.write(&mut writer)?;
        let nb_scalars = header.scalars_name.len();

        // We are only interested in the inversed affine
        let affine4 =
            header.affine4_to_rasmm.try_inverse().expect("Unable to inverse 4x4 affine matrix");
        let (affine, translation) = get_affine_and_translation(&affine4);

        Ok(Writer { writer, affine4, affine, translation, real_n_count: 0, nb_scalars })
    }

    pub fn apply_affine(&mut self, affine: &Affine4) {
        self.affine4 = self.affine4 * affine;
        let (affine, translation) = get_affine_and_translation(&self.affine4);
        self.affine = affine;
        self.translation = translation;
    }

    pub fn write<T: Writable>(&mut self, data: T) {
        data.write(self);
    }

    pub fn write_from_iter<I>(&mut self, streamline: I, len: usize)
    where
        I: IntoIterator<Item = Point>,
    {
        write_streamline!(self, streamline, len);
    }

    fn write_point(&mut self, p: &Point) {
        let p = self.affine * p + self.translation;
        self.writer.write_f32::<TrkEndianness>(p.x).unwrap();
        self.writer.write_f32::<TrkEndianness>(p.y).unwrap();
        self.writer.write_f32::<TrkEndianness>(p.z).unwrap();
    }

    fn write_f32s(&mut self, data: &[f32]) {
        for &d in data {
            self.writer.write_f32::<TrkEndianness>(d).unwrap();
        }
    }
}

// Finally write `n_count`
impl Drop for Writer {
    fn drop(&mut self) {
        CHeader::seek_n_count_field(&mut self.writer)
            .expect("Unable to seek to 'n_count' field before closing trk file.");
        self.writer
            .write_i32::<TrkEndianness>(self.real_n_count)
            .expect("Unable to write 'n_count' field before closing trk file.");
    }
}