seqtkrs 0.1.1

A Rust reimplementation of seqtk, a fast and lightweight tool for processing biological sequences in FASTA/FASTQ format
Documentation
Build #2854080 2026-01-27 15:40:24

# rustc version rustc 1.95.0-nightly (474276961 2026-01-26)

# docs.rs version docsrs 0.1.0 (f194f2b4 2026-01-25 )

# build log [INFO] running `Command { std: "docker" "create" "-v" "/home/cratesfyi/workspace/builds/seqtkrs-0.1.1/target:/opt/rustwide/target:rw,Z" "-v" "/home/cratesfyi/workspace/builds/seqtkrs-0.1.1/source:/opt/rustwide/workdir:ro,Z" "-v" "/home/cratesfyi/workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/home/cratesfyi/workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "6442450944" "--cpus" "6" "--user" "1001:1001" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--emit=invocation-specific\", \"--resource-suffix\", \"-20260126-1.95.0-nightly-474276961\", \"--static-root-path\", \"/-/rustdoc.static/\", \"--cap-lints\", \"warn\", \"--extern-html-root-takes-precedence\"]" "--offline" "-Zunstable-options" "--config=doc.extern-map.registries.crates-io=\"https://docs.rs/{pkg_name}/{version}/x86_64-unknown-linux-gnu\"" "-Zrustdoc-scrape-examples" "-j6" "--target" "x86_64-unknown-linux-gnu", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 2e46429ca5f2e994e3ece3f08575ece4067bf7f03e5c0760438b1702841f47e7 [INFO] running `Command { std: "docker" "start" "-a" "2e46429ca5f2e994e3ece3f08575ece4067bf7f03e5c0760438b1702841f47e7", kill_on_drop: false }` [INFO] [stderr] warning: target filter specified, but no targets matched; this is a no-op [INFO] [stderr] Documenting seqtkrs v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] warning: unresolved link to `i` [INFO] [stderr] --> src/algorithms/trimmer.rs:49:49 [INFO] [stderr] | [INFO] [stderr] 49 | /// - 得分 = error_threshold - error_prob(qual[i]) [INFO] [stderr] | ^ no item named `i` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `11` [INFO] [stderr] --> src/commands/sample.rs:38:15 [INFO] [stderr] | [INFO] [stderr] 38 | /// 随机种子 [11] [INFO] [stderr] | ^^ no item named `11` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `0` [INFO] [stderr] --> src/commands/seq.rs:25:24 [INFO] [stderr] | [INFO] [stderr] 25 | /// Mask低于此质量值的碱基 [0] [INFO] [stderr] | ^ no item named `0` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `255` [INFO] [stderr] --> src/commands/seq.rs:29:24 [INFO] [stderr] | [INFO] [stderr] 29 | /// Mask高于此质量值的碱基 [255] [INFO] [stderr] | ^^^ no item named `255` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `0` [INFO] [stderr] --> src/commands/seq.rs:33:33 [INFO] [stderr] | [INFO] [stderr] 33 | /// 被mask的碱基转换为此字符;0表示转为小写 [0] [INFO] [stderr] | ^ no item named `0` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `0` [INFO] [stderr] --> src/commands/seq.rs:37:26 [INFO] [stderr] | [INFO] [stderr] 37 | /// 每行输出的残基数量;0表示单行 [0] [INFO] [stderr] | ^ no item named `0` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `33` [INFO] [stderr] --> src/commands/seq.rs:41:32 [INFO] [stderr] | [INFO] [stderr] 41 | /// 质量值偏移:ASCII-INT得到碱基质量 [33] [INFO] [stderr] | ^^ no item named `33` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `11` [INFO] [stderr] --> src/commands/seq.rs:45:25 [INFO] [stderr] | [INFO] [stderr] 45 | /// 随机种子(与-f选项配合使用)[11] [INFO] [stderr] | ^^ no item named `11` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `0` [INFO] [stderr] --> src/commands/seq.rs:57:22 [INFO] [stderr] | [INFO] [stderr] 57 | /// 丢弃长度小于此值的序列 [0] [INFO] [stderr] | ^ no item named `0` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `0` [INFO] [stderr] --> src/commands/subseq.rs:46:23 [INFO] [stderr] | [INFO] [stderr] 46 | /// 序列行长度(0表示不换行)[0] [INFO] [stderr] | ^ no item named `0` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `name` [INFO] [stderr] --> src/utils/region.rs:99:35 [INFO] [stderr] | [INFO] [stderr] 99 | /// 2. BED格式(tab分隔:chr start end [name] [score] [strand]) [INFO] [stderr] | ^^^^ no item named `name` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `score` [INFO] [stderr] --> src/utils/region.rs:99:42 [INFO] [stderr] | [INFO] [stderr] 99 | /// 2. BED格式(tab分隔:chr start end [name] [score] [strand]) [INFO] [stderr] | ^^^^^ no item named `score` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `strand` [INFO] [stderr] --> src/utils/region.rs:99:50 [INFO] [stderr] | [INFO] [stderr] 99 | /// 2. BED格式(tab分隔:chr start end [name] [score] [strand]) [INFO] [stderr] | ^^^^^^ no item named `strand` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: `seqtkrs` (lib doc) generated 13 warnings [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.79s [INFO] [stderr] Generated /opt/rustwide/target/x86_64-unknown-linux-gnu/doc/seqtkrs/index.html [INFO] running `Command { std: "docker" "inspect" "2e46429ca5f2e994e3ece3f08575ece4067bf7f03e5c0760438b1702841f47e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2e46429ca5f2e994e3ece3f08575ece4067bf7f03e5c0760438b1702841f47e7", kill_on_drop: false }` [INFO] [stdout] 2e46429ca5f2e994e3ece3f08575ece4067bf7f03e5c0760438b1702841f47e7