Module seq_io::fastq

Efficient FASTQ reading and writing

Structs

• ErrorPosition
• OwnedRecord
  A FASTQ record that ownes its data (requires allocations)
• Position
  Holds line number and byte offset of a FASTQ record
• Reader
  FASTQ parser.
• RecordSet
  Set of FASTQ records that owns it’s buffer and knows the positions of each record.
• RecordSetIter
  Iterator over record sets
• RecordsIntoIter
  Iterator of OwnedRecord that owns the underlying reader
• RecordsIter
  Borrowed iterator of OwnedRecord
• RefRecord
  A FASTQ record that borrows data from a buffer

Enums

• Error
  FASTQ parsing error

Traits

• Record
  FASTQ record trait implemented by both RefRecord and OwnedRecord

Functions

• write_parts
  Helper function for writing data (not necessarily stored in a Record instance) to the FASTQ format. The ID and description parts of the header are supplied separately instead of a whole header line
• write_to
  Helper function for writing data (not necessarily stored in a Record instance) to the FASTQ format