[[package]]
name = "adler"
version = "0.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ee2a4ec343196209d6594e19543ae87a39f96d5534d7174822a3ad825dd6ed7e"
[[package]]
name = "aho-corasick"
version = "0.7.14"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b476ce7103678b0c6d3d395dbbae31d48ff910bd28be979ba5d48c6351131d0d"
dependencies = [
"memchr",
]
[[package]]
name = "approx"
version = "0.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f0e60b75072ecd4168020818c0107f2857bb6c4e64252d8d3983f6263b40a5c3"
dependencies = [
"num-traits",
]
[[package]]
name = "array-macro"
version = "1.0.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "06e97b4e522f9e55523001238ac59d13a8603af57f69980de5d8de4bbbe8ada6"
[[package]]
name = "atty"
version = "0.2.14"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d9b39be18770d11421cdb1b9947a45dd3f37e93092cbf377614828a319d5fee8"
dependencies = [
"hermit-abi",
"libc",
"winapi",
]
[[package]]
name = "autocfg"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cdb031dd78e28731d87d56cc8ffef4a8f36ca26c38fe2de700543e627f8a464a"
[[package]]
name = "bio"
version = "0.32.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f1161c7b80eea668a884b4be136d83ef5175df5aaa6dcba482bdf4fbe1d046f2"
dependencies = [
"approx",
"bio-types",
"bit-set",
"bv",
"bytecount",
"csv",
"custom_derive",
"enum-map",
"fnv",
"fxhash",
"getset",
"itertools",
"itertools-num",
"lazy_static",
"multimap",
"ndarray",
"newtype_derive",
"num-integer",
"num-traits",
"ordered-float",
"petgraph",
"quick-error",
"regex",
"serde",
"serde_derive",
"snafu",
"statrs",
"strum",
"strum_macros",
"triple_accel",
"vec_map",
]
[[package]]
name = "bio-types"
version = "0.7.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9d4011aaa9f8bfece367ef7d23f23279710eacf7df462d92c5135eabeb82799b"
dependencies = [
"derive-new",
"lazy_static",
"quick-error",
"regex",
"serde",
"serde_derive",
]
[[package]]
name = "bit-set"
version = "0.5.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6e11e16035ea35e4e5997b393eacbf6f63983188f7a2ad25bfb13465f5ad59de"
dependencies = [
"bit-vec",
]
[[package]]
name = "bit-vec"
version = "0.6.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5f0dc55f2d8a1a85650ac47858bb001b4c0dd73d79e3c455a842925e68d29cd3"
[[package]]
name = "bitflags"
version = "1.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cf1de2fe8c75bc145a2f577add951f8134889b4795d47466a54a5c846d691693"
[[package]]
name = "bstr"
version = "0.2.14"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "473fc6b38233f9af7baa94fb5852dca389e3d95b8e21c8e3719301462c5d9faf"
dependencies = [
"lazy_static",
"memchr",
"regex-automata",
"serde",
]
[[package]]
name = "buf_redux"
version = "0.8.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b953a6887648bb07a535631f2bc00fbdb2a2216f135552cb3f534ed136b9c07f"
dependencies = [
"memchr",
"safemem",
]
[[package]]
name = "bumpalo"
version = "3.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2e8c087f005730276d1096a652e92a8bacee2e2472bcc9715a74d2bec38b5820"
[[package]]
name = "bv"
version = "0.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8834bb1d8ee5dc048ee3124f2c7c1afcc6bc9aed03f11e9dfd8c69470a5db340"
dependencies = [
"feature-probe",
"serde",
]
[[package]]
name = "bytecount"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b0017894339f586ccb943b01b9555de56770c11cda818e7e3d8bd93f4ed7f46e"
[[package]]
name = "byteorder"
version = "1.3.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "08c48aae112d48ed9f069b33538ea9e3e90aa263cfa3d1c24309612b1f7472de"
[[package]]
name = "cast"
version = "0.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4b9434b9a5aa1450faa3f9cb14ea0e8c53bb5d2b3c1bfd1ab4fc03e9f33fbfb0"
dependencies = [
"rustc_version 0.2.3",
]
[[package]]
name = "cc"
version = "1.0.61"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ed67cbde08356238e75fc4656be4749481eeffb09e19f320a25237d5221c985d"
[[package]]
name = "cfg-if"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4785bdd1c96b2a846b2bd7cc02e86b6b3dbf14e7e53446c4f54c92a361040822"
[[package]]
name = "cfg-if"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
[[package]]
name = "clap"
version = "2.33.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "37e58ac78573c40708d45522f0d80fa2f01cc4f9b4e2bf749807255454312002"
dependencies = [
"bitflags",
"textwrap",
"unicode-width",
]
[[package]]
name = "const_fn"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ce90df4c658c62f12d78f7508cf92f9173e5184a539c10bfe54a3107b3ffd0f2"
[[package]]
name = "crc32fast"
version = "1.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ba125de2af0df55319f41944744ad91c71113bf74a4646efff39afe1f6842db1"
dependencies = [
"cfg-if 0.1.10",
]
[[package]]
name = "criterion"
version = "0.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "70daa7ceec6cf143990669a04c7df13391d55fb27bd4079d252fca774ba244d8"
dependencies = [
"atty",
"cast",
"clap",
"criterion-plot",
"csv",
"itertools",
"lazy_static",
"num-traits",
"oorandom",
"plotters",
"rayon",
"regex",
"serde",
"serde_cbor",
"serde_derive",
"serde_json",
"tinytemplate",
"walkdir",
]
[[package]]
name = "criterion-plot"
version = "0.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e022feadec601fba1649cfa83586381a4ad31c6bf3a9ab7d408118b05dd9889d"
dependencies = [
"cast",
"itertools",
]
[[package]]
name = "crossbeam"
version = "0.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fd01a6eb3daaafa260f6fc94c3a6c36390abc2080e38e3e34ced87393fb77d80"
dependencies = [
"cfg-if 1.0.0",
"crossbeam-channel 0.5.0",
"crossbeam-deque 0.8.0",
"crossbeam-epoch 0.9.0",
"crossbeam-queue",
"crossbeam-utils 0.8.0",
]
[[package]]
name = "crossbeam-channel"
version = "0.4.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b153fe7cbef478c567df0f972e02e6d736db11affe43dfc9c56a9374d1adfb87"
dependencies = [
"crossbeam-utils 0.7.2",
"maybe-uninit",
]
[[package]]
name = "crossbeam-channel"
version = "0.5.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dca26ee1f8d361640700bde38b2c37d8c22b3ce2d360e1fc1c74ea4b0aa7d775"
dependencies = [
"cfg-if 1.0.0",
"crossbeam-utils 0.8.0",
]
[[package]]
name = "crossbeam-deque"
version = "0.7.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9f02af974daeee82218205558e51ec8768b48cf524bd01d550abe5573a608285"
dependencies = [
"crossbeam-epoch 0.8.2",
"crossbeam-utils 0.7.2",
"maybe-uninit",
]
[[package]]
name = "crossbeam-deque"
version = "0.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "94af6efb46fef72616855b036a624cf27ba656ffc9be1b9a3c931cfc7749a9a9"
dependencies = [
"cfg-if 1.0.0",
"crossbeam-epoch 0.9.0",
"crossbeam-utils 0.8.0",
]
[[package]]
name = "crossbeam-epoch"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "058ed274caafc1f60c4997b5fc07bf7dc7cca454af7c6e81edffe5f33f70dace"
dependencies = [
"autocfg",
"cfg-if 0.1.10",
"crossbeam-utils 0.7.2",
"lazy_static",
"maybe-uninit",
"memoffset",
"scopeguard",
]
[[package]]
name = "crossbeam-epoch"
version = "0.9.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ec0f606a85340376eef0d6d8fec399e6d4a544d648386c6645eb6d0653b27d9f"
dependencies = [
"cfg-if 1.0.0",
"const_fn",
"crossbeam-utils 0.8.0",
"lazy_static",
"memoffset",
"scopeguard",
]
[[package]]
name = "crossbeam-queue"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6b2a58563f049aa3bae172bc4120f093b5901161c629f280a1f40ba55317d774"
dependencies = [
"cfg-if 1.0.0",
"crossbeam-utils 0.8.0",
]
[[package]]
name = "crossbeam-utils"
version = "0.7.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c3c7c73a2d1e9fc0886a08b93e98eb643461230d5f1925e4036204d5f2e261a8"
dependencies = [
"autocfg",
"cfg-if 0.1.10",
"lazy_static",
]
[[package]]
name = "crossbeam-utils"
version = "0.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ec91540d98355f690a86367e566ecad2e9e579f230230eb7c21398372be73ea5"
dependencies = [
"autocfg",
"cfg-if 1.0.0",
"const_fn",
"lazy_static",
]
[[package]]
name = "csv"
version = "1.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "00affe7f6ab566df61b4be3ce8cf16bc2576bca0963ceb0955e45d514bf9a279"
dependencies = [
"bstr",
"csv-core",
"itoa",
"ryu",
"serde",
]
[[package]]
name = "csv-core"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b2466559f260f48ad25fe6317b3c8dac77b5bdb5763ac7d9d6103530663bc90"
dependencies = [
"memchr",
]
[[package]]
name = "custom_derive"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9"
[[package]]
name = "derive-new"
version = "0.5.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "71f31892cd5c62e414316f2963c5689242c43d8e7bbcaaeca97e5e28c95d91d9"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "doc-comment"
version = "0.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fea41bba32d969b513997752735605054bc0dfa92b4c56bf1189f2e174be7a10"
[[package]]
name = "either"
version = "1.6.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e78d4f1cc4ae33bbfc157ed5d5a5ef3bc29227303d595861deb238fcec4e9457"
[[package]]
name = "enum-map"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2f81f09b9cb18af2ea1da2688a1d6b1762b4f938d7495bb034bce48d4c608043"
dependencies = [
"array-macro",
"enum-map-derive",
]
[[package]]
name = "enum-map-derive"
version = "0.4.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dbb83f1906a6bb6ad07885dfbdf0528ed9d71594451558917717653d77b3cc53"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "fastq"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c0dc54743d8fa10c176c4be22ccc6da3cc2b7f8b1b1b5a7fa17f4cbb94d3f29c"
dependencies = [
"flate2",
"lz4",
"memchr",
]
[[package]]
name = "feature-probe"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da"
[[package]]
name = "fixedbitset"
version = "0.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "37ab347416e802de484e4d03c7316c48f1ecb56574dfd4a46a80f173ce1de04d"
[[package]]
name = "flate2"
version = "1.0.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "da80be589a72651dcda34d8b35bcdc9b7254ad06325611074d9cc0fbb19f60ee"
dependencies = [
"cfg-if 0.1.10",
"crc32fast",
"libc",
"libz-sys",
"miniz_oxide",
]
[[package]]
name = "fnv"
version = "1.0.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1"
[[package]]
name = "fxhash"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c31b6d751ae2c7f11320402d34e41349dd1016f8d5d45e48c4312bc8625af50c"
dependencies = [
"byteorder",
]
[[package]]
name = "getrandom"
version = "0.1.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fc587bc0ec293155d5bfa6b9891ec18a1e330c234f896ea47fbada4cadbe47e6"
dependencies = [
"cfg-if 0.1.10",
"libc",
"wasi",
]
[[package]]
name = "getset"
version = "0.0.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5bb3f5b7d8d70c9bd23cf29b2b38094661418fb0ea79f1b0cc2019a11d6f5429"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "half"
version = "1.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d36fab90f82edc3c747f9d438e06cf0a491055896f2a279638bb5beed6c40177"
[[package]]
name = "hashbrown"
version = "0.9.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d7afe4a420e3fe79967a00898cc1f4db7c8a49a9333a29f8a4bd76a253d5cd04"
[[package]]
name = "heck"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "20564e78d53d2bb135c343b3f47714a56af2061f1c928fdb541dc7b9fdd94205"
dependencies = [
"unicode-segmentation",
]
[[package]]
name = "hermit-abi"
version = "0.1.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5aca5565f760fb5b220e499d72710ed156fdb74e631659e99377d9ebfbd13ae8"
dependencies = [
"libc",
]
[[package]]
name = "indexmap"
version = "1.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "55e2e4c765aa53a0424761bf9f41aa7a6ac1efa87238f59560640e27fca028f2"
dependencies = [
"autocfg",
"hashbrown",
]
[[package]]
name = "itertools"
version = "0.9.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "284f18f85651fe11e8a991b2adb42cb078325c996ed026d994719efcfca1d54b"
dependencies = [
"either",
]
[[package]]
name = "itertools-num"
version = "0.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a872a22f9e6f7521ca557660adb96dd830e54f0f490fa115bb55dd69d38b27e7"
dependencies = [
"num-traits",
]
[[package]]
name = "itoa"
version = "0.4.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dc6f3ad7b9d11a0c00842ff8de1b60ee58661048eb8049ed33c73594f359d7e6"
[[package]]
name = "js-sys"
version = "0.3.45"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ca059e81d9486668f12d455a4ea6daa600bd408134cd17e3d3fb5a32d1f016f8"
dependencies = [
"wasm-bindgen",
]
[[package]]
name = "lazy_static"
version = "1.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646"
[[package]]
name = "libc"
version = "0.2.79"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2448f6066e80e3bfc792e9c98bf705b4b0fc6e8ef5b43e5889aff0eaa9c58743"
[[package]]
name = "libz-sys"
version = "1.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "602113192b08db8f38796c4e85c39e960c145965140e918018bcde1952429655"
dependencies = [
"cc",
"pkg-config",
"vcpkg",
]
[[package]]
name = "log"
version = "0.4.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4fabed175da42fed1fa0746b0ea71f412aa9d35e76e95e59b192c64b9dc2bf8b"
dependencies = [
"cfg-if 0.1.10",
]
[[package]]
name = "lz4"
version = "1.23.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "aac20ed6991e01bf6a2e68cc73df2b389707403662a8ba89f68511fb340f724c"
dependencies = [
"libc",
"lz4-sys",
]
[[package]]
name = "lz4-sys"
version = "1.9.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dca79aa95d8b3226213ad454d328369853be3a1382d89532a854f4d69640acae"
dependencies = [
"cc",
"libc",
]
[[package]]
name = "matches"
version = "0.1.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7ffc5c5338469d4d3ea17d269fa8ea3512ad247247c30bd2df69e68309ed0a08"
[[package]]
name = "matrixmultiply"
version = "0.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4f7ec66360130972f34830bfad9ef05c6610a43938a467bcc9ab9369ab3478f"
dependencies = [
"rawpointer",
]
[[package]]
name = "maybe-uninit"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60302e4db3a61da70c0cb7991976248362f30319e88850c487b9b95bbf059e00"
[[package]]
name = "memchr"
version = "2.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3728d817d99e5ac407411fa471ff9800a778d88a24685968b36824eaf4bee400"
[[package]]
name = "memoffset"
version = "0.5.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "043175f069eda7b85febe4a74abbaeff828d9f8b448515d3151a14a3542811aa"
dependencies = [
"autocfg",
]
[[package]]
name = "miniz_oxide"
version = "0.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0f2d26ec3309788e423cfbf68ad1800f061638098d76a83681af979dc4eda19d"
dependencies = [
"adler",
"autocfg",
]
[[package]]
name = "multimap"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1255076139a83bb467426e7f8d0134968a8118844faa755985e077cf31850333"
dependencies = [
"serde",
]
[[package]]
name = "ndarray"
version = "0.13.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac06db03ec2f46ee0ecdca1a1c34a99c0d188a0d83439b84bf0cb4b386e4ab09"
dependencies = [
"matrixmultiply",
"num-complex",
"num-integer",
"num-traits",
"rawpointer",
]
[[package]]
name = "newtype_derive"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac8cd24d9f185bb7223958d8c1ff7a961b74b1953fd05dba7cc568a63b3861ec"
dependencies = [
"rustc_version 0.1.7",
]
[[package]]
name = "num-complex"
version = "0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b6b19411a9719e753aff12e5187b74d60d3dc449ec3f4dc21e3989c3f554bc95"
dependencies = [
"autocfg",
"num-traits",
]
[[package]]
name = "num-integer"
version = "0.1.43"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8d59457e662d541ba17869cf51cf177c0b5f0cbf476c66bdc90bf1edac4f875b"
dependencies = [
"autocfg",
"num-traits",
]
[[package]]
name = "num-traits"
version = "0.2.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac267bcc07f48ee5f8935ab0d24f316fb722d7a1292e2913f0cc196b29ffd611"
dependencies = [
"autocfg",
]
[[package]]
name = "num_cpus"
version = "1.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "05499f3756671c15885fee9034446956fff3f243d6077b91e5767df161f766b3"
dependencies = [
"hermit-abi",
"libc",
]
[[package]]
name = "oorandom"
version = "11.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a170cebd8021a008ea92e4db85a72f80b35df514ec664b296fdcbb654eac0b2c"
[[package]]
name = "ordered-float"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3741934be594d77de1c8461ebcbbe866f585ea616a9753aa78f2bdc69f0e4579"
dependencies = [
"num-traits",
]
[[package]]
name = "petgraph"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "467d164a6de56270bd7c4d070df81d07beace25012d5103ced4e9ff08d6afdb7"
dependencies = [
"fixedbitset",
"indexmap",
]
[[package]]
name = "pkg-config"
version = "0.3.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3831453b3449ceb48b6d9c7ad7c96d5ea673e9b470a1dc578c2ce6521230884c"
[[package]]
name = "plotters"
version = "0.2.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0d1685fbe7beba33de0330629da9d955ac75bd54f33d7b79f9a895590124f6bb"
dependencies = [
"js-sys",
"num-traits",
"wasm-bindgen",
"web-sys",
]
[[package]]
name = "ppv-lite86"
version = "0.2.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c36fa947111f5c62a733b652544dd0016a43ce89619538a8ef92724a6f501a20"
[[package]]
name = "proc-macro2"
version = "1.0.24"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1e0704ee1a7e00d7bb417d0770ea303c1bccbabf0ef1667dae92b5967f5f8a71"
dependencies = [
"unicode-xid",
]
[[package]]
name = "quick-error"
version = "1.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a1d01941d82fa2ab50be1e79e6714289dd7cde78eba4c074bc5a4374f650dfe0"
[[package]]
name = "quote"
version = "1.0.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "aa563d17ecb180e500da1cfd2b028310ac758de548efdd203e18f283af693f37"
dependencies = [
"proc-macro2",
]
[[package]]
name = "rand"
version = "0.7.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6a6b1679d49b24bbfe0c803429aa1874472f50d9b363131f0e89fc356b544d03"
dependencies = [
"getrandom",
"libc",
"rand_chacha",
"rand_core",
"rand_hc",
]
[[package]]
name = "rand_chacha"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f4c8ed856279c9737206bf725bf36935d8666ead7aa69b52be55af369d193402"
dependencies = [
"ppv-lite86",
"rand_core",
]
[[package]]
name = "rand_core"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "90bde5296fc891b0cef12a6d03ddccc162ce7b2aff54160af9338f8d40df6d19"
dependencies = [
"getrandom",
]
[[package]]
name = "rand_distr"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "96977acbdd3a6576fb1d27391900035bf3863d4a16422973a409b488cf29ffb2"
dependencies = [
"rand",
]
[[package]]
name = "rand_hc"
version = "0.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ca3129af7b92a17112d59ad498c6f81eaf463253766b90396d39ea7a39d6613c"
dependencies = [
"rand_core",
]
[[package]]
name = "rand_isaac"
version = "0.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8df6b0b3dc9991a10b2d91a86d1129314502169a1bf6afa67328945e02498b76"
dependencies = [
"rand_core",
]
[[package]]
name = "rawpointer"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"
[[package]]
name = "rayon"
version = "1.4.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dcf6960dc9a5b4ee8d3e4c5787b4a112a8818e0290a42ff664ad60692fdf2032"
dependencies = [
"autocfg",
"crossbeam-deque 0.7.3",
"either",
"rayon-core",
]
[[package]]
name = "rayon-core"
version = "1.8.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e8c4fec834fb6e6d2dd5eece3c7b432a52f0ba887cf40e595190c4107edc08bf"
dependencies = [
"crossbeam-channel 0.4.4",
"crossbeam-deque 0.7.3",
"crossbeam-utils 0.7.2",
"lazy_static",
"num_cpus",
]
[[package]]
name = "regex"
version = "1.4.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8963b85b8ce3074fecffde43b4b0dded83ce2f367dc8d363afc56679f3ee820b"
dependencies = [
"aho-corasick",
"memchr",
"regex-syntax",
"thread_local",
]
[[package]]
name = "regex-automata"
version = "0.1.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ae1ded71d66a4a97f5e961fd0cb25a5f366a42a41570d16a763a69c092c26ae4"
dependencies = [
"byteorder",
]
[[package]]
name = "regex-syntax"
version = "0.6.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8cab7a364d15cde1e505267766a2d3c4e22a843e1a601f0fa7564c0f82ced11c"
[[package]]
name = "rustc_version"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084"
dependencies = [
"semver 0.1.20",
]
[[package]]
name = "rustc_version"
version = "0.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "138e3e0acb6c9fb258b19b67cb8abd63c00679d2851805ea151465464fe9030a"
dependencies = [
"semver 0.9.0",
]
[[package]]
name = "ryu"
version = "1.0.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "71d301d4193d031abdd79ff7e3dd721168a9572ef3fe51a1517aba235bd8f86e"
[[package]]
name = "safemem"
version = "0.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ef703b7cb59335eae2eb93ceb664c0eb7ea6bf567079d843e09420219668e072"
[[package]]
name = "same-file"
version = "1.0.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "93fc1dc3aaa9bfed95e02e6eadabb4baf7e3078b0bd1b4d7b6b0b68378900502"
dependencies = [
"winapi-util",
]
[[package]]
name = "scoped_threadpool"
version = "0.1.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1d51f5df5af43ab3f1360b429fa5e0152ac5ce8c0bd6485cae490332e96846a8"
[[package]]
name = "scopeguard"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d29ab0c6d3fc0ee92fe66e2d99f700eab17a8d57d1c1d3b748380fb20baa78cd"
[[package]]
name = "semver"
version = "0.1.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac"
[[package]]
name = "semver"
version = "0.9.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1d7eb9ef2c18661902cc47e535f9bc51b78acd254da71d375c2f6720d9a40403"
dependencies = [
"semver-parser",
]
[[package]]
name = "semver-parser"
version = "0.7.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "388a1df253eca08550bef6c72392cfe7c30914bf41df5269b68cbd6ff8f570a3"
[[package]]
name = "seq_io"
version = "0.4.0-alpha.0"
dependencies = [
"bio",
"buf_redux",
"criterion",
"crossbeam",
"fastq",
"lazy_static",
"matches",
"memchr",
"rand",
"rand_distr",
"rand_isaac",
"scoped_threadpool",
"serde",
]
[[package]]
name = "serde"
version = "1.0.117"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b88fa983de7720629c9387e9f517353ed404164b1e482c970a90c1a4aaf7dc1a"
dependencies = [
"serde_derive",
]
[[package]]
name = "serde_cbor"
version = "0.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1e18acfa2f90e8b735b2836ab8d538de304cbb6729a7360729ea5a895d15a622"
dependencies = [
"half",
"serde",
]
[[package]]
name = "serde_derive"
version = "1.0.117"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cbd1ae72adb44aab48f325a02444a5fc079349a8d804c1fc922aed3f7454c74e"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "serde_json"
version = "1.0.59"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dcac07dbffa1c65e7f816ab9eba78eb142c6d44410f4eeba1e26e4f5dfa56b95"
dependencies = [
"itoa",
"ryu",
"serde",
]
[[package]]
name = "snafu"
version = "0.6.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9c4e6046e4691afe918fd1b603fd6e515bcda5388a1092a9edbada307d159f09"
dependencies = [
"doc-comment",
"snafu-derive",
]
[[package]]
name = "snafu-derive"
version = "0.6.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7073448732a89f2f3e6581989106067f403d378faeafb4a50812eb814170d3e5"
dependencies = [
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "statrs"
version = "0.12.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cce16f6de653e88beca7bd13780d08e09d4489dbca1f9210e041bc4852481382"
dependencies = [
"rand",
]
[[package]]
name = "strum"
version = "0.18.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "57bd81eb48f4c437cadc685403cad539345bf703d78e63707418431cecd4522b"
[[package]]
name = "strum_macros"
version = "0.18.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "87c85aa3f8ea653bfd3ddf25f7ee357ee4d204731f6aa9ad04002306f6e2774c"
dependencies = [
"heck",
"proc-macro2",
"quote",
"syn",
]
[[package]]
name = "syn"
version = "1.0.45"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ea9c5432ff16d6152371f808fb5a871cd67368171b09bb21b43df8e4a47a3556"
dependencies = [
"proc-macro2",
"quote",
"unicode-xid",
]
[[package]]
name = "textwrap"
version = "0.11.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d326610f408c7a4eb6f51c37c330e496b08506c9457c9d34287ecc38809fb060"
dependencies = [
"unicode-width",
]
[[package]]
name = "thread_local"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d40c6d1b69745a6ec6fb1ca717914848da4b44ae29d9b3080cbee91d72a69b14"
dependencies = [
"lazy_static",
]
[[package]]
name = "tinytemplate"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6d3dc76004a03cec1c5932bca4cdc2e39aaa798e3f82363dd94f9adf6098c12f"
dependencies = [
"serde",
"serde_json",
]
[[package]]
name = "triple_accel"
version = "0.3.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "622b09ce2fe2df4618636fb92176d205662f59803f39e70d1c333393082de96c"
[[package]]
name = "unicode-segmentation"
version = "1.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e83e153d1053cbb5a118eeff7fd5be06ed99153f00dbcd8ae310c5fb2b22edc0"
[[package]]
name = "unicode-width"
version = "0.1.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9337591893a19b88d8d87f2cec1e73fad5cdfd10e5a6f349f498ad6ea2ffb1e3"
[[package]]
name = "unicode-xid"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f7fe0bb3479651439c9112f72b6c505038574c9fbb575ed1bf3b797fa39dd564"
[[package]]
name = "vcpkg"
version = "0.2.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6454029bf181f092ad1b853286f23e2c507d8e8194d01d92da4a55c274a5508c"
[[package]]
name = "vec_map"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f1bddf1187be692e79c5ffeab891132dfb0f236ed36a43c7ed39f1165ee20191"
dependencies = [
"serde",
]
[[package]]
name = "walkdir"
version = "2.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "777182bc735b6424e1a57516d35ed72cb8019d85c8c9bf536dccb3445c1a2f7d"
dependencies = [
"same-file",
"winapi",
"winapi-util",
]
[[package]]
name = "wasi"
version = "0.9.0+wasi-snapshot-preview1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cccddf32554fecc6acb585f82a32a72e28b48f8c4c1883ddfeeeaa96f7d8e519"
[[package]]
name = "wasm-bindgen"
version = "0.2.68"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1ac64ead5ea5f05873d7c12b545865ca2b8d28adfc50a49b84770a3a97265d42"
dependencies = [
"cfg-if 0.1.10",
"wasm-bindgen-macro",
]
[[package]]
name = "wasm-bindgen-backend"
version = "0.2.68"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f22b422e2a757c35a73774860af8e112bff612ce6cb604224e8e47641a9e4f68"
dependencies = [
"bumpalo",
"lazy_static",
"log",
"proc-macro2",
"quote",
"syn",
"wasm-bindgen-shared",
]
[[package]]
name = "wasm-bindgen-macro"
version = "0.2.68"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6b13312a745c08c469f0b292dd2fcd6411dba5f7160f593da6ef69b64e407038"
dependencies = [
"quote",
"wasm-bindgen-macro-support",
]
[[package]]
name = "wasm-bindgen-macro-support"
version = "0.2.68"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f249f06ef7ee334cc3b8ff031bfc11ec99d00f34d86da7498396dc1e3b1498fe"
dependencies = [
"proc-macro2",
"quote",
"syn",
"wasm-bindgen-backend",
"wasm-bindgen-shared",
]
[[package]]
name = "wasm-bindgen-shared"
version = "0.2.68"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1d649a3145108d7d3fbcde896a468d1bd636791823c9921135218ad89be08307"
[[package]]
name = "web-sys"
version = "0.3.45"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4bf6ef87ad7ae8008e15a355ce696bed26012b7caa21605188cfd8214ab51e2d"
dependencies = [
"js-sys",
"wasm-bindgen",
]
[[package]]
name = "winapi"
version = "0.3.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c839a674fcd7a98952e593242ea400abe93992746761e38641405d28b00f419"
dependencies = [
"winapi-i686-pc-windows-gnu",
"winapi-x86_64-pc-windows-gnu",
]
[[package]]
name = "winapi-i686-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"
[[package]]
name = "winapi-util"
version = "0.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178"
dependencies = [
"winapi",
]
[[package]]
name = "winapi-x86_64-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"