rustybam 0.1.5

Mitchell Vollger's utilities for alignments
Documentation
# This file is automatically @generated by Cargo.
# It is not intended for manual editing.
version = 3

[[package]]
name = "aho-corasick"
version = "0.7.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1e37cfd5e7657ada45f742d6e99ca5788580b5c529dc78faf11ece6dc702656f"
dependencies = [
 "memchr",
]

[[package]]
name = "alga"
version = "0.9.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4f823d037a7ec6ea2197046bafd4ae150e6bc36f9ca347404f46a46823fa84f2"
dependencies = [
 "approx",
 "num-complex 0.2.4",
 "num-traits",
]

[[package]]
name = "anyhow"
version = "1.0.43"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "28ae2b3dec75a406790005a200b1bd89785afc02517a00ca99ecfe093ee9e6cf"

[[package]]
name = "approx"
version = "0.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f0e60b75072ecd4168020818c0107f2857bb6c4e64252d8d3983f6263b40a5c3"
dependencies = [
 "num-traits",
]

[[package]]
name = "array-macro"
version = "1.0.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "06e97b4e522f9e55523001238ac59d13a8603af57f69980de5d8de4bbbe8ada6"

[[package]]
name = "atty"
version = "0.2.14"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d9b39be18770d11421cdb1b9947a45dd3f37e93092cbf377614828a319d5fee8"
dependencies = [
 "hermit-abi",
 "libc",
 "winapi",
]

[[package]]
name = "autocfg"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cdb031dd78e28731d87d56cc8ffef4a8f36ca26c38fe2de700543e627f8a464a"

[[package]]
name = "bimap"
version = "0.6.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "50ae17cabbc8a38a1e3e4c1a6a664e9a09672dc14d0896fa8d865d3a5a446b07"

[[package]]
name = "bio"
version = "0.34.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6499d92d6002444351fe273f820abadbd7165a039a474dab9f4ef611563e39a9"
dependencies = [
 "anyhow",
 "approx",
 "bio-types",
 "bit-set",
 "bv",
 "bytecount",
 "csv",
 "custom_derive",
 "enum-map",
 "fnv",
 "fxhash",
 "getset",
 "itertools 0.9.0",
 "itertools-num",
 "lazy_static",
 "multimap",
 "ndarray",
 "newtype_derive",
 "num-integer",
 "num-traits",
 "ordered-float",
 "petgraph",
 "regex",
 "serde",
 "serde_derive",
 "statrs",
 "strum",
 "strum_macros",
 "thiserror",
 "triple_accel",
 "vec_map",
]

[[package]]
name = "bio-types"
version = "0.12.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3f79d996fbffc59cbaeec4c831f9c1bbf6debdfadd9bb02ff4caf70507159c63"
dependencies = [
 "derive-new",
 "lazy_static",
 "regex",
 "strum_macros",
 "thiserror",
]

[[package]]
name = "bit-set"
version = "0.5.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6e11e16035ea35e4e5997b393eacbf6f63983188f7a2ad25bfb13465f5ad59de"
dependencies = [
 "bit-vec",
]

[[package]]
name = "bit-vec"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "349f9b6a179ed607305526ca489b34ad0a41aed5f7980fa90eb03160b69598fb"

[[package]]
name = "bitflags"
version = "1.3.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"

[[package]]
name = "bstr"
version = "0.2.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "90682c8d613ad3373e66de8c6411e0ae2ab2571e879d2efbf73558cc66f21279"
dependencies = [
 "lazy_static",
 "memchr",
 "regex-automata",
 "serde",
]

[[package]]
name = "bv"
version = "0.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8834bb1d8ee5dc048ee3124f2c7c1afcc6bc9aed03f11e9dfd8c69470a5db340"
dependencies = [
 "feature-probe",
 "serde",
]

[[package]]
name = "bytecount"
version = "0.6.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "72feb31ffc86498dacdbd0fcebb56138e7177a8cc5cea4516031d15ae85a742e"

[[package]]
name = "byteorder"
version = "1.4.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610"

[[package]]
name = "bzip2-sys"
version = "0.1.11+1.0.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "736a955f3fa7875102d57c82b8cac37ec45224a07fd32d58f9f7a186b6cd4cdc"
dependencies = [
 "cc",
 "libc",
 "pkg-config",
]

[[package]]
name = "calm_io"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2ea0608700fe42d90ec17ad0f86335cf229b67df2e34e7f463e8241ce7b8fa5f"
dependencies = [
 "calmio_filters",
]

[[package]]
name = "calmio_filters"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "846501f4575cd66766a40bb7ab6d8e960adc7eb49f753c8232bd8e0e09cf6ca2"
dependencies = [
 "quote 1.0.9",
 "syn 1.0.74",
]

[[package]]
name = "cc"
version = "1.0.69"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e70cc2f62c6ce1868963827bd677764c62d07c3d9a3e1fb1177ee1a9ab199eb2"
dependencies = [
 "jobserver",
]

[[package]]
name = "cfg-if"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"

[[package]]
name = "clap"
version = "3.0.0-beta.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fcd70aa5597dbc42f7217a543f9ef2768b2ef823ba29036072d30e1d88e98406"
dependencies = [
 "atty",
 "bitflags",
 "clap_derive",
 "indexmap",
 "lazy_static",
 "os_str_bytes",
 "strsim",
 "termcolor",
 "textwrap",
 "vec_map",
 "yaml-rust",
]

[[package]]
name = "clap_derive"
version = "3.0.0-beta.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0b5bb0d655624a0b8770d1c178fb8ffcb1f91cc722cb08f451e3dc72465421ac"
dependencies = [
 "heck",
 "proc-macro-error",
 "proc-macro2 1.0.28",
 "quote 1.0.9",
 "syn 1.0.74",
]

[[package]]
name = "clap_generate"
version = "3.0.0-beta.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2d9b1abef93569f290952eff3c4a0a92d6767bb5158db095b4dc9a512b1c3643"
dependencies = [
 "clap",
]

[[package]]
name = "colored"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b3616f750b84d8f0de8a58bda93e08e2a81ad3f523089b05f1dffecab48c6cbd"
dependencies = [
 "atty",
 "lazy_static",
 "winapi",
]

[[package]]
name = "crossbeam-channel"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "06ed27e177f16d65f0f0c22a213e17c696ace5dd64b14258b52f9417ccb52db4"
dependencies = [
 "cfg-if",
 "crossbeam-utils",
]

[[package]]
name = "crossbeam-deque"
version = "0.8.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6455c0ca19f0d2fbf751b908d5c55c1f5cbc65e03c4225427254b46890bdde1e"
dependencies = [
 "cfg-if",
 "crossbeam-epoch",
 "crossbeam-utils",
]

[[package]]
name = "crossbeam-epoch"
version = "0.9.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4ec02e091aa634e2c3ada4a392989e7c3116673ef0ac5b72232439094d73b7fd"
dependencies = [
 "cfg-if",
 "crossbeam-utils",
 "lazy_static",
 "memoffset",
 "scopeguard",
]

[[package]]
name = "crossbeam-utils"
version = "0.8.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d82cfc11ce7f2c3faef78d8a684447b40d503d9681acebed6cb728d45940c4db"
dependencies = [
 "cfg-if",
 "lazy_static",
]

[[package]]
name = "csv"
version = "1.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "22813a6dc45b335f9bade10bf7271dc477e81113e89eb251a0bc2a8a81c536e1"
dependencies = [
 "bstr",
 "csv-core",
 "itoa",
 "ryu",
 "serde",
]

[[package]]
name = "csv-core"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2b2466559f260f48ad25fe6317b3c8dac77b5bdb5763ac7d9d6103530663bc90"
dependencies = [
 "memchr",
]

[[package]]
name = "curl-sys"
version = "0.4.45+curl-7.78.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "de9e5a72b1c744eb5dd20b2be4d7eb84625070bb5c4ab9b347b70464ab1e62eb"
dependencies = [
 "cc",
 "libc",
 "libz-sys",
 "openssl-sys",
 "pkg-config",
 "vcpkg",
 "winapi",
]

[[package]]
name = "custom_derive"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9"

[[package]]
name = "derefable"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e519abf1289075763071c981958e89948b079fc54962617a0e6413d9ce44cbe7"
dependencies = [
 "proc-macro2 0.4.30",
 "quote 0.6.13",
 "syn 0.15.44",
]

[[package]]
name = "derive-new"
version = "0.5.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3418329ca0ad70234b9735dc4ceed10af4df60eff9c8e7b06cb5e520d92c3535"
dependencies = [
 "proc-macro2 1.0.28",
 "quote 1.0.9",
 "syn 1.0.74",
]

[[package]]
name = "either"
version = "1.6.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e78d4f1cc4ae33bbfc157ed5d5a5ef3bc29227303d595861deb238fcec4e9457"

[[package]]
name = "enum-map"
version = "0.6.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4187999839f4ae8be35cf185d1381aa8dc32d2f5951349cc37ae49ebc4781855"
dependencies = [
 "array-macro",
 "enum-map-derive",
]

[[package]]
name = "enum-map-derive"
version = "0.4.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e5c450cf304c9e18d45db562025a14fb1ca0f5c769b6f609309f81d4c31de455"
dependencies = [
 "proc-macro2 1.0.28",
 "quote 1.0.9",
 "syn 1.0.74",
]

[[package]]
name = "feature-probe"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "835a3dc7d1ec9e75e2b5fb4ba75396837112d2060b03f7d43bc1897c7f7211da"

[[package]]
name = "fixedbitset"
version = "0.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "37ab347416e802de484e4d03c7316c48f1ecb56574dfd4a46a80f173ce1de04d"

[[package]]
name = "fnv"
version = "1.0.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1"

[[package]]
name = "form_urlencoded"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5fc25a87fa4fd2094bffb06925852034d90a17f0d1e05197d4956d3555752191"
dependencies = [
 "matches",
 "percent-encoding",
]

[[package]]
name = "fs-utils"
version = "1.1.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6fc7a9dc005c944c98a935e7fd626faf5bf7e5a609f94bc13e42fc4a02e52593"
dependencies = [
 "quick-error",
]

[[package]]
name = "fxhash"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c31b6d751ae2c7f11320402d34e41349dd1016f8d5d45e48c4312bc8625af50c"
dependencies = [
 "byteorder",
]

[[package]]
name = "generic-array"
version = "0.13.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f797e67af32588215eaaab8327027ee8e71b9dd0b2b26996aedf20c030fce309"
dependencies = [
 "typenum",
]

[[package]]
name = "getrandom"
version = "0.1.16"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8fc3cb4d91f53b50155bdcfd23f6a4c39ae1969c2ae85982b135750cccaf5fce"
dependencies = [
 "cfg-if",
 "libc",
 "wasi",
]

[[package]]
name = "getset"
version = "0.0.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5bb3f5b7d8d70c9bd23cf29b2b38094661418fb0ea79f1b0cc2019a11d6f5429"
dependencies = [
 "proc-macro2 1.0.28",
 "quote 1.0.9",
 "syn 1.0.74",
]

[[package]]
name = "glob"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9b919933a397b79c37e33b77bb2aa3dc8eb6e165ad809e58ff75bc7db2e34574"

[[package]]
name = "hashbrown"
version = "0.11.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ab5ef0d4909ef3724cc8cce6ccc8572c5c817592e9285f5464f8e86f8bd3726e"

[[package]]
name = "heck"
version = "0.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6d621efb26863f0e9924c6ac577e8275e5e6b77455db64ffa6c65c904e9e132c"
dependencies = [
 "unicode-segmentation",
]

[[package]]
name = "hermit-abi"
version = "0.1.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "62b467343b94ba476dcb2500d242dadbb39557df889310ac77c5d99100aaac33"
dependencies = [
 "libc",
]

[[package]]
name = "hts-sys"
version = "1.11.1-fix2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e6c05850ae977fad8985689e9bfa2720e6ea5a07b55c1fcf11e9d2f187a97ea8"
dependencies = [
 "bzip2-sys",
 "cc",
 "curl-sys",
 "fs-utils",
 "glob",
 "libz-sys",
 "lzma-sys",
 "openssl-sys",
]

[[package]]
name = "idna"
version = "0.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "418a0a6fab821475f634efe3ccc45c013f742efe03d853e8d3355d5cb850ecf8"
dependencies = [
 "matches",
 "unicode-bidi",
 "unicode-normalization",
]

[[package]]
name = "ieee754"
version = "0.2.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9007da9cacbd3e6343da136e98b0d2df013f553d35bdec8b518f07bea768e19c"

[[package]]
name = "indexmap"
version = "1.7.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bc633605454125dec4b66843673f01c7df2b89479b32e0ed634e43a91cff62a5"
dependencies = [
 "autocfg",
 "hashbrown",
]

[[package]]
name = "itertools"
version = "0.9.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "284f18f85651fe11e8a991b2adb42cb078325c996ed026d994719efcfca1d54b"
dependencies = [
 "either",
]

[[package]]
name = "itertools"
version = "0.10.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "69ddb889f9d0d08a67338271fa9b62996bc788c7796a5c18cf057420aaed5eaf"
dependencies = [
 "either",
]

[[package]]
name = "itertools-num"
version = "0.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a872a22f9e6f7521ca557660adb96dd830e54f0f490fa115bb55dd69d38b27e7"
dependencies = [
 "num-traits",
]

[[package]]
name = "itoa"
version = "0.4.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dd25036021b0de88a0aff6b850051563c6516d0bf53f8638938edbb9de732736"

[[package]]
name = "jobserver"
version = "0.1.23"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f5ca711fd837261e14ec9e674f092cbb931d3fa1482b017ae59328ddc6f3212b"
dependencies = [
 "libc",
]

[[package]]
name = "lazy_static"
version = "1.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646"

[[package]]
name = "libc"
version = "0.2.99"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a7f823d141fe0a24df1e23b4af4e3c7ba9e5966ec514ea068c93024aa7deb765"

[[package]]
name = "libm"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c7d73b3f436185384286bd8098d17ec07c9a7d2388a6599f824d8502b529702a"

[[package]]
name = "libz-sys"
version = "1.1.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "de5435b8549c16d423ed0c03dbaafe57cf6c3344744f1242520d59c9d8ecec66"
dependencies = [
 "cc",
 "libc",
 "pkg-config",
 "vcpkg",
]

[[package]]
name = "linear-map"
version = "1.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bfae20f6b19ad527b550c223fddc3077a547fc70cda94b9b566575423fd303ee"

[[package]]
name = "linked-hash-map"
version = "0.5.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7fb9b38af92608140b86b693604b9ffcc5824240a484d1ecd4795bacb2fe88f3"

[[package]]
name = "lzma-sys"
version = "0.1.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bdb4b7c3eddad11d3af9e86c487607d2d2442d185d848575365c4856ba96d619"
dependencies = [
 "cc",
 "libc",
 "pkg-config",
]

[[package]]
name = "matches"
version = "0.1.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a3e378b66a060d48947b590737b30a1be76706c8dd7b8ba0f2fe3989c68a853f"

[[package]]
name = "matrixmultiply"
version = "0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "916806ba0031cd542105d916a97c8572e1fa6dd79c9c51e7eb43a09ec2dd84c1"
dependencies = [
 "rawpointer",
]

[[package]]
name = "memchr"
version = "2.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b16bd47d9e329435e309c58469fe0791c2d0d1ba96ec0954152a5ae2b04387dc"

[[package]]
name = "memoffset"
version = "0.6.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "59accc507f1338036a0477ef61afdae33cde60840f4dfe481319ce3ad116ddf9"
dependencies = [
 "autocfg",
]

[[package]]
name = "multimap"
version = "0.8.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e5ce46fe64a9d73be07dcbe690a38ce1b293be448fd8ce1e6c1b8062c9f72c6a"
dependencies = [
 "serde",
]

[[package]]
name = "nalgebra"
version = "0.19.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0abb021006c01b126a936a8dd1351e0720d83995f4fc942d0d426c654f990745"
dependencies = [
 "alga",
 "approx",
 "generic-array",
 "matrixmultiply",
 "num-complex 0.2.4",
 "num-rational",
 "num-traits",
 "rand",
 "rand_distr",
 "typenum",
]

[[package]]
name = "ndarray"
version = "0.14.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6c0d5c9540a691d153064dc47a4db2504587a75eae07bf1d73f7a596ebc73c04"
dependencies = [
 "matrixmultiply",
 "num-complex 0.3.1",
 "num-integer",
 "num-traits",
 "rawpointer",
]

[[package]]
name = "newtype_derive"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac8cd24d9f185bb7223958d8c1ff7a961b74b1953fd05dba7cc568a63b3861ec"
dependencies = [
 "rustc_version",
]

[[package]]
name = "num-complex"
version = "0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b6b19411a9719e753aff12e5187b74d60d3dc449ec3f4dc21e3989c3f554bc95"
dependencies = [
 "autocfg",
 "num-traits",
]

[[package]]
name = "num-complex"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "747d632c0c558b87dbabbe6a82f3b4ae03720d0646ac5b7b4dae89394be5f2c5"
dependencies = [
 "num-traits",
]

[[package]]
name = "num-integer"
version = "0.1.44"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d2cc698a63b549a70bc047073d2949cce27cd1c7b0a4a862d08a8031bc2801db"
dependencies = [
 "autocfg",
 "num-traits",
]

[[package]]
name = "num-rational"
version = "0.2.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c000134b5dbf44adc5cb772486d335293351644b801551abe8f75c84cfa4aef"
dependencies = [
 "autocfg",
 "num-integer",
 "num-traits",
]

[[package]]
name = "num-traits"
version = "0.2.14"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9a64b1ec5cda2586e284722486d802acf1f7dbdc623e2bfc57e65ca1cd099290"
dependencies = [
 "autocfg",
 "libm",
]

[[package]]
name = "num_cpus"
version = "1.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "05499f3756671c15885fee9034446956fff3f243d6077b91e5767df161f766b3"
dependencies = [
 "hermit-abi",
 "libc",
]

[[package]]
name = "openssl-src"
version = "111.15.0+1.1.1k"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b1a5f6ae2ac04393b217ea9f700cd04fa9bf3d93fae2872069f3d15d908af70a"
dependencies = [
 "cc",
]

[[package]]
name = "openssl-sys"
version = "0.9.65"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7a7907e3bfa08bb85105209cdfcb6c63d109f8f6c1ed6ca318fff5c1853fbc1d"
dependencies = [
 "autocfg",
 "cc",
 "libc",
 "openssl-src",
 "pkg-config",
 "vcpkg",
]

[[package]]
name = "ordered-float"
version = "1.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3305af35278dd29f46fcdd139e0b1fbfae2153f0e5928b39b035542dd31e37b7"
dependencies = [
 "num-traits",
]

[[package]]
name = "os_str_bytes"
version = "3.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6acbef58a60fe69ab50510a55bc8cdd4d6cf2283d27ad338f54cb52747a9cf2d"

[[package]]
name = "percent-encoding"
version = "2.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4fd5641d01c8f18a23da7b6fe29298ff4b55afcccdf78973b24cf3175fee32e"

[[package]]
name = "petgraph"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "467d164a6de56270bd7c4d070df81d07beace25012d5103ced4e9ff08d6afdb7"
dependencies = [
 "fixedbitset",
 "indexmap",
]

[[package]]
name = "pkg-config"
version = "0.3.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3831453b3449ceb48b6d9c7ad7c96d5ea673e9b470a1dc578c2ce6521230884c"

[[package]]
name = "ppv-lite86"
version = "0.2.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac74c624d6b2d21f425f752262f42188365d7b8ff1aff74c82e45136510a4857"

[[package]]
name = "proc-macro-error"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c"
dependencies = [
 "proc-macro-error-attr",
 "proc-macro2 1.0.28",
 "quote 1.0.9",
 "syn 1.0.74",
 "version_check",
]

[[package]]
name = "proc-macro-error-attr"
version = "1.0.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869"
dependencies = [
 "proc-macro2 1.0.28",
 "quote 1.0.9",
 "version_check",
]

[[package]]
name = "proc-macro2"
version = "0.4.30"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cf3d2011ab5c909338f7887f4fc896d35932e29146c12c8d01da6b22a80ba759"
dependencies = [
 "unicode-xid 0.1.0",
]

[[package]]
name = "proc-macro2"
version = "1.0.28"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c7ed8b8c7b886ea3ed7dde405212185f423ab44682667c8c6dd14aa1d9f6612"
dependencies = [
 "unicode-xid 0.2.2",
]

[[package]]
name = "quick-error"
version = "1.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a1d01941d82fa2ab50be1e79e6714289dd7cde78eba4c074bc5a4374f650dfe0"

[[package]]
name = "quote"
version = "0.6.13"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6ce23b6b870e8f94f81fb0a363d65d86675884b34a09043c81e5562f11c1f8e1"
dependencies = [
 "proc-macro2 0.4.30",
]

[[package]]
name = "quote"
version = "1.0.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c3d0b9745dc2debf507c8422de05d7226cc1f0644216dfdfead988f9b1ab32a7"
dependencies = [
 "proc-macro2 1.0.28",
]

[[package]]
name = "rand"
version = "0.7.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6a6b1679d49b24bbfe0c803429aa1874472f50d9b363131f0e89fc356b544d03"
dependencies = [
 "getrandom",
 "libc",
 "rand_chacha",
 "rand_core",
 "rand_hc",
]

[[package]]
name = "rand_chacha"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f4c8ed856279c9737206bf725bf36935d8666ead7aa69b52be55af369d193402"
dependencies = [
 "ppv-lite86",
 "rand_core",
]

[[package]]
name = "rand_core"
version = "0.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "90bde5296fc891b0cef12a6d03ddccc162ce7b2aff54160af9338f8d40df6d19"
dependencies = [
 "getrandom",
]

[[package]]
name = "rand_distr"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "96977acbdd3a6576fb1d27391900035bf3863d4a16422973a409b488cf29ffb2"
dependencies = [
 "rand",
]

[[package]]
name = "rand_hc"
version = "0.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ca3129af7b92a17112d59ad498c6f81eaf463253766b90396d39ea7a39d6613c"
dependencies = [
 "rand_core",
]

[[package]]
name = "rawpointer"
version = "0.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"

[[package]]
name = "rayon"
version = "1.5.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c06aca804d41dbc8ba42dfd964f0d01334eceb64314b9ecf7c5fad5188a06d90"
dependencies = [
 "autocfg",
 "crossbeam-deque",
 "either",
 "rayon-core",
]

[[package]]
name = "rayon-core"
version = "1.9.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d78120e2c850279833f1dd3582f730c4ab53ed95aeaaaa862a2a5c71b1656d8e"
dependencies = [
 "crossbeam-channel",
 "crossbeam-deque",
 "crossbeam-utils",
 "lazy_static",
 "num_cpus",
]

[[package]]
name = "regex"
version = "1.5.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d07a8629359eb56f1e2fb1652bb04212c072a87ba68546a04065d525673ac461"
dependencies = [
 "aho-corasick",
 "memchr",
 "regex-syntax",
]

[[package]]
name = "regex-automata"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6c230d73fb8d8c1b9c0b3135c5142a8acee3a0558fb8db5cf1cb65f8d7862132"

[[package]]
name = "regex-syntax"
version = "0.6.25"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f497285884f3fcff424ffc933e56d7cbca511def0c9831a7f9b5f6153e3cc89b"

[[package]]
name = "rust-htslib"
version = "0.36.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b6d2e5f7980deaf4f41366a5b0d51c2cadaf8639bb12d1258fdab87f37007bd9"
dependencies = [
 "bio-types",
 "custom_derive",
 "derefable",
 "derive-new",
 "hts-sys",
 "ieee754",
 "lazy_static",
 "libc",
 "linear-map",
 "newtype_derive",
 "regex",
 "strum_macros",
 "thiserror",
 "url",
]

[[package]]
name = "rustc_version"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084"
dependencies = [
 "semver",
]

[[package]]
name = "rustybam"
version = "0.1.5"
dependencies = [
 "bimap",
 "bio",
 "bio-types",
 "calm_io",
 "clap",
 "clap_generate",
 "colored",
 "itertools 0.10.1",
 "rayon",
 "regex",
 "rust-htslib",
]

[[package]]
name = "ryu"
version = "1.0.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "71d301d4193d031abdd79ff7e3dd721168a9572ef3fe51a1517aba235bd8f86e"

[[package]]
name = "scopeguard"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d29ab0c6d3fc0ee92fe66e2d99f700eab17a8d57d1c1d3b748380fb20baa78cd"

[[package]]
name = "semver"
version = "0.1.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac"

[[package]]
name = "serde"
version = "1.0.127"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f03b9878abf6d14e6779d3f24f07b2cfa90352cfec4acc5aab8f1ac7f146fae8"
dependencies = [
 "serde_derive",
]

[[package]]
name = "serde_derive"
version = "1.0.127"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a024926d3432516606328597e0f224a51355a493b49fdd67e9209187cbe55ecc"
dependencies = [
 "proc-macro2 1.0.28",
 "quote 1.0.9",
 "syn 1.0.74",
]

[[package]]
name = "statrs"
version = "0.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1e34b58a8f9b7462b6922e0b4e3c83d1b3c2075f7f996a56d6c66afa81590064"
dependencies = [
 "nalgebra",
 "rand",
]

[[package]]
name = "strsim"
version = "0.10.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623"

[[package]]
name = "strum"
version = "0.20.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7318c509b5ba57f18533982607f24070a55d353e90d4cae30c467cdb2ad5ac5c"

[[package]]
name = "strum_macros"
version = "0.20.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ee8bc6b87a5112aeeab1f4a9f7ab634fe6cbefc4850006df31267f4cfb9e3149"
dependencies = [
 "heck",
 "proc-macro2 1.0.28",
 "quote 1.0.9",
 "syn 1.0.74",
]

[[package]]
name = "syn"
version = "0.15.44"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9ca4b3b69a77cbe1ffc9e198781b7acb0c7365a883670e8f1c1bc66fba79a5c5"
dependencies = [
 "proc-macro2 0.4.30",
 "quote 0.6.13",
 "unicode-xid 0.1.0",
]

[[package]]
name = "syn"
version = "1.0.74"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1873d832550d4588c3dbc20f01361ab00bfe741048f71e3fecf145a7cc18b29c"
dependencies = [
 "proc-macro2 1.0.28",
 "quote 1.0.9",
 "unicode-xid 0.2.2",
]

[[package]]
name = "termcolor"
version = "1.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2dfed899f0eb03f32ee8c6a0aabdb8a7949659e3466561fc0adf54e26d88c5f4"
dependencies = [
 "winapi-util",
]

[[package]]
name = "textwrap"
version = "0.14.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0066c8d12af8b5acd21e00547c3797fde4e8677254a7ee429176ccebbe93dd80"
dependencies = [
 "unicode-width",
]

[[package]]
name = "thiserror"
version = "1.0.26"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "93119e4feac1cbe6c798c34d3a53ea0026b0b1de6a120deef895137c0529bfe2"
dependencies = [
 "thiserror-impl",
]

[[package]]
name = "thiserror-impl"
version = "1.0.26"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "060d69a0afe7796bf42e9e2ff91f5ee691fb15c53d38b4b62a9a53eb23164745"
dependencies = [
 "proc-macro2 1.0.28",
 "quote 1.0.9",
 "syn 1.0.74",
]

[[package]]
name = "tinyvec"
version = "1.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "848a1e1181b9f6753b5e96a092749e29b11d19ede67dfbbd6c7dc7e0f49b5338"
dependencies = [
 "tinyvec_macros",
]

[[package]]
name = "tinyvec_macros"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cda74da7e1a664f795bb1f8a87ec406fb89a02522cf6e50620d016add6dbbf5c"

[[package]]
name = "triple_accel"
version = "0.3.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "622b09ce2fe2df4618636fb92176d205662f59803f39e70d1c333393082de96c"

[[package]]
name = "typenum"
version = "1.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "879f6906492a7cd215bfa4cf595b600146ccfac0c79bcbd1f3000162af5e8b06"

[[package]]
name = "unicode-bidi"
version = "0.3.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "246f4c42e67e7a4e3c6106ff716a5d067d4132a642840b242e357e468a2a0085"

[[package]]
name = "unicode-normalization"
version = "0.1.19"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d54590932941a9e9266f0832deed84ebe1bf2e4c9e4a3554d393d18f5e854bf9"
dependencies = [
 "tinyvec",
]

[[package]]
name = "unicode-segmentation"
version = "1.8.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8895849a949e7845e06bd6dc1aa51731a103c42707010a5b591c0038fb73385b"

[[package]]
name = "unicode-width"
version = "0.1.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9337591893a19b88d8d87f2cec1e73fad5cdfd10e5a6f349f498ad6ea2ffb1e3"

[[package]]
name = "unicode-xid"
version = "0.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fc72304796d0818e357ead4e000d19c9c174ab23dc11093ac919054d20a6a7fc"

[[package]]
name = "unicode-xid"
version = "0.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8ccb82d61f80a663efe1f787a51b16b5a51e3314d6ac365b08639f52387b33f3"

[[package]]
name = "url"
version = "2.2.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a507c383b2d33b5fc35d1861e77e6b383d158b2da5e14fe51b83dfedf6fd578c"
dependencies = [
 "form_urlencoded",
 "idna",
 "matches",
 "percent-encoding",
]

[[package]]
name = "vcpkg"
version = "0.2.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "accd4ea62f7bb7a82fe23066fb0957d48ef677f6eeb8215f372f52e48bb32426"

[[package]]
name = "vec_map"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f1bddf1187be692e79c5ffeab891132dfb0f236ed36a43c7ed39f1165ee20191"
dependencies = [
 "serde",
]

[[package]]
name = "version_check"
version = "0.9.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5fecdca9a5291cc2b8dcf7dc02453fee791a280f3743cb0905f8822ae463b3fe"

[[package]]
name = "wasi"
version = "0.9.0+wasi-snapshot-preview1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cccddf32554fecc6acb585f82a32a72e28b48f8c4c1883ddfeeeaa96f7d8e519"

[[package]]
name = "winapi"
version = "0.3.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c839a674fcd7a98952e593242ea400abe93992746761e38641405d28b00f419"
dependencies = [
 "winapi-i686-pc-windows-gnu",
 "winapi-x86_64-pc-windows-gnu",
]

[[package]]
name = "winapi-i686-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"

[[package]]
name = "winapi-util"
version = "0.1.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178"
dependencies = [
 "winapi",
]

[[package]]
name = "winapi-x86_64-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"

[[package]]
name = "yaml-rust"
version = "0.4.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "56c1936c4cc7a1c9ab21a1ebb602eb942ba868cbd44a99cb7cdc5892335e1c85"
dependencies = [
 "linked-hash-map",
]