[[bin]]
name = "rb"
path = "src/main.rs"
[[bin]]
name = "rustybam"
path = "src/main.rs"
[build-dependencies.clap]
features = ["derive"]
version = "3.2.22"
[build-dependencies.clap_complete]
version = "3.2.5"
[build-dependencies.env_logger]
version = "0.9.0"
[build-dependencies.log]
version = "0.4.19"
[dependencies.anyhow]
version = "1.0.71"
[dependencies.bimap]
version = "0.6.3"
[dependencies.bio]
version = "1.3"
[dependencies.bio-types]
version = "1.0"
[dependencies.calm_io]
version = "0.1.1"
[dependencies.chrono]
version = "0.4.26"
[dependencies.clap]
features = ["derive"]
version = "3.2.22"
[dependencies.colored]
version = "2.0.0"
[dependencies.env_logger]
version = "0.9.0"
[dependencies.flate2]
default-features = false
version = "~1"
[dependencies.gzp]
default-features = false
version = "0.11"
[dependencies.itertools]
version = "0.10.0"
[dependencies.lazy_static]
version = "1.4.0"
[dependencies.log]
version = "0.4.19"
[dependencies.natord]
version = "1.0.9"
[dependencies.needletail]
version = "0.5.1"
[dependencies.rayon]
version = "1.7"
[dependencies.regex]
version = "1.8"
[dependencies.rust-htslib]
version = "0.44"
[dependencies.snap]
optional = true
version = "1.1"
[features]
any_zlib = []
default = ["deflate_zlib_ng", "snap_default", "libdeflate"]
deflate_rust = ["gzp/deflate_rust", "flate2/rust_backend"]
deflate_zlib = ["gzp/deflate_zlib", "flate2/zlib", "any_zlib"]
deflate_zlib_ng = ["gzp/deflate_zlib_ng", "flate2/zlib-ng-compat", "any_zlib"]
libdeflate = ["gzp/libdeflate"]
snap_default = ["gzp/snappy_default", "snap", "snappy"]
snappy = []
[package]
authors = ["Mitchell R. Vollger <mrvollger@gmail.com>"]
build = "build.rs"
categories = ["command-line-utilities"]
description = "bioinformatics toolkit in rust"
edition = "2021"
homepage = "https://mrvollger.github.io/rustybam/"
keywords = ["cli", "bam", "paf", "liftover"]
license = "MIT"
name = "rustybam"
readme = "README.md"
repository = "https://github.com/mrvollger/rustybam"
version = "0.1.32"