Module rust_htslib::htslib::vcf [] [src]

Structs

Struct_Unnamed1
Struct_Unnamed11
Struct_Unnamed12
Struct_Unnamed13
Struct_Unnamed14
Struct_Unnamed15
Struct_Unnamed19
Struct_Unnamed2
Struct_Unnamed22
Struct_Unnamed26
Struct_Unnamed28
Struct_Unnamed29
Struct_Unnamed30
Struct_Unnamed31
Struct_Unnamed32
Struct_Unnamed33
Struct_Unnamed34
Struct_Unnamed35
Struct_Unnamed36
Struct_Unnamed37
Struct_Unnamed39
Struct_Unnamed4
Struct_Unnamed40
Struct_Unnamed5
Struct_Unnamed6
Struct_Unnamed7
Struct_Unnamed8
Struct_Unnamed9
Struct__IO_FILE
Struct__IO_marker
Struct___kstring_t
Struct___locale_struct
Struct___pthread_internal_list
Struct___pthread_mutex_s
Struct___va_list_tag
Struct_drand48_data
Struct_htsFormat
Struct_random_data
Struct_timespec
Struct_timeval
Union_Unnamed10
Union_Unnamed16
Union_Unnamed17
Union_Unnamed18
Union_Unnamed20
Union_Unnamed21
Union_Unnamed23
Union_Unnamed24
Union_Unnamed25
Union_Unnamed27
Union_Unnamed3
Union_Unnamed38
Union_pthread_attr_t
Union_wait

Enums

Struct_BGZF
Struct__IO_FILE_plus
Struct__IO_jump_t
Struct___hts_idx_t
Struct___locale_data
Struct_cram_fd
Struct_hFILE

Constants

BCF_DT_CTG
BCF_DT_ID
BCF_DT_SAMPLE
BCF_HL_CTG
BCF_HL_FLT
BCF_HL_FMT
BCF_HL_GEN
BCF_HL_INFO
BCF_HL_STR
BCF_HT_FLAG
BCF_HT_INT
BCF_HT_REAL
BCF_HT_STR
BCF_UN_FLT
BCF_UN_STR
CRAM_OPT_DECODE_MD
CRAM_OPT_EMBED_REF
CRAM_OPT_IGNORE_MD5
CRAM_OPT_MULTI_SEQ_PER_SLICE
CRAM_OPT_NO_REF
CRAM_OPT_NTHREADS
CRAM_OPT_PREFIX
CRAM_OPT_RANGE
CRAM_OPT_REFERENCE
CRAM_OPT_REQUIRED_FIELDS
CRAM_OPT_SEQS_PER_SLICE
CRAM_OPT_SHARED_REF
CRAM_OPT_SLICES_PER_CONTAINER
CRAM_OPT_THREAD_POOL
CRAM_OPT_USE_BZIP2
CRAM_OPT_USE_LZMA
CRAM_OPT_USE_RANS
CRAM_OPT_VERBOSITY
CRAM_OPT_VERSION
SAM_AUX
SAM_CIGAR
SAM_FLAG
SAM_MAPQ
SAM_PNEXT
SAM_POS
SAM_QNAME
SAM_QUAL
SAM_RGAUX
SAM_RNAME
SAM_RNEXT
SAM_SEQ
SAM_TLEN
__codecvt_error
__codecvt_noconv
__codecvt_ok
__codecvt_partial
bai
bam
bcf
bed
bgzf
binary_format
category_maximum
compression_maximum
crai
cram
csi
custom
format_maximum
gzi
gzip
index_file
no_compression
region_list
sam
sequence_data
tbi
text_format
unknown_category
unknown_format
variant_data
vcf

Statics

_IO_2_1_stderr_
_IO_2_1_stdin_
_IO_2_1_stdout_
bcf_float_missing
bcf_float_vector_end
bcf_type_shift
hts_verbose
seq_nt16_int
seq_nt16_str
seq_nt16_table
stderr
stdin
stdout
sys_errlist
sys_nerr

Functions

_Exit
_IO_feof
_IO_ferror
_IO_flockfile
_IO_free_backup_area
_IO_ftrylockfile
_IO_funlockfile
_IO_getc
_IO_padn
_IO_peekc_locked
_IO_putc
_IO_seekoff
_IO_seekpos
_IO_sgetn
_IO_vfprintf
_IO_vfscanf
__assert
__assert_fail
__assert_perror_fail
__bzero
__ctype_get_mb_cur_max
__getdelim
__overflow
__stpcpy
__stpncpy
__strtok_r
__uflow
__underflow
a64l
abort
abs
alloca
atexit
atof
atoi
atol
atoll
bcf_add_filter
bcf_clear
bcf_copy
bcf_destroy
bcf_dup
bcf_empty
bcf_enc_vchar
bcf_enc_vfloat
bcf_enc_vint
bcf_fmt_array
bcf_fmt_sized_array
bcf_get_fmt
bcf_get_fmt_id
bcf_get_format_string
bcf_get_format_values
bcf_get_info
bcf_get_info_id
bcf_get_info_values
bcf_get_variant_type
bcf_get_variant_types
bcf_has_filter
bcf_hdr_add_hrec
bcf_hdr_add_sample
bcf_hdr_append
bcf_hdr_combine
bcf_hdr_destroy
bcf_hdr_dup
bcf_hdr_fmt_text
bcf_hdr_get_hrec
bcf_hdr_get_version
bcf_hdr_id2int
bcf_hdr_init
bcf_hdr_parse
bcf_hdr_parse_line
bcf_hdr_printf
bcf_hdr_read
bcf_hdr_remove
bcf_hdr_seqnames
bcf_hdr_set
bcf_hdr_set_samples
bcf_hdr_set_version
bcf_hdr_subset
bcf_hdr_sync
bcf_hdr_write
bcf_hrec_add_key
bcf_hrec_destroy
bcf_hrec_dup
bcf_hrec_find_key
bcf_hrec_format
bcf_hrec_set_val
bcf_index_build
bcf_init
bcf_is_snp
bcf_read
bcf_read1_core
bcf_readrec
bcf_remove_filter
bcf_subset
bcf_subset_format
bcf_translate
bcf_unpack
bcf_update_alleles
bcf_update_alleles_str
bcf_update_filter
bcf_update_format
bcf_update_format_string
bcf_update_id
bcf_update_info
bcf_write
bcmp
bcopy
bsearch
bzero
calloc
cfree
clearenv
clearerr
clearerr_unlocked
ctermid
div
dprintf
drand48
drand48_r
ecvt
ecvt_r
erand48
erand48_r
exit
fclose
fcvt
fcvt_r
fdopen
feof
feof_unlocked
ferror
ferror_unlocked
fflush
fflush_unlocked
ffs
fgetc
fgetc_unlocked
fgetpos
fgets
fileno
fileno_unlocked
flockfile
fmemopen
fopen
fprintf
fputc
fputc_unlocked
fputs
fread
fread_unlocked
free
freopen
fscanf
fseek
fseeko
fsetpos
ftell
ftello
ftrylockfile
funlockfile
fwrite
fwrite_unlocked
gcvt
getc
getc_unlocked
getchar
getchar_unlocked
getdelim
getenv
getline
getloadavg
gets
getsubopt
getw
gnu_dev_major
gnu_dev_makedev
gnu_dev_minor
hrec_add_idx
hts_close
hts_detect_format
hts_file_type
hts_format_description
hts_get_format
hts_getline
hts_hopen
hts_idx_destroy
hts_idx_finish
hts_idx_get_meta
hts_idx_get_n_no_coor
hts_idx_get_stat
hts_idx_init
hts_idx_load
hts_idx_push
hts_idx_save
hts_idx_seqnames
hts_idx_set_meta
hts_itr_destroy
hts_itr_next
hts_itr_query
hts_itr_querys
hts_open
hts_parse_reg
hts_readlines
hts_readlist
hts_set_fai_filename
hts_set_opt
hts_set_threads
hts_version
index
initstate
initstate_r
jrand48
jrand48_r
kmemmem
ksplit_core
ksprintf
kstrnstr
kstrstr
kstrtok
kvsprintf
l64a
labs
lcong48
lcong48_r
ldiv
llabs
lldiv
lrand48
lrand48_r
malloc
mblen
mbstowcs
mbtowc
memccpy
memchr
memcmp
memcpy
memmove
memset
mkdtemp
mkstemp
mkstemps
mktemp
mrand48
mrand48_r
nrand48
nrand48_r
on_exit
open_memstream
pclose
perror
popen
posix_memalign
printf
pselect
putc
putc_unlocked
putchar
putchar_unlocked
putenv
puts
putw
qecvt
qecvt_r
qfcvt
qfcvt_r
qgcvt
qsort
rand
rand_r
random
random_r
realloc
realpath
remove
rename
renameat
rewind
rindex
rpmatch
scanf
seed48
seed48_r
select
setbuf
setbuffer
setenv
setlinebuf
setstate
setstate_r
setvbuf
snprintf
sprintf
srand
srand48
srand48_r
srandom
srandom_r
sscanf
stpcpy
stpncpy
strcasecmp
strcat
strchr
strcmp
strcoll
strcoll_l
strcpy
strcspn
strdup
strerror
strerror_l
strerror_r
strlen
strncasecmp
strncat
strncmp
strncpy
strndup
strnlen
strpbrk
strrchr
strsep
strsignal
strspn
strstr
strtod
strtof
strtok
strtok_r
strtol
strtold
strtoll
strtoq
strtoul
strtoull
strtouq
strxfrm
strxfrm_l
system
tempnam
tmpfile
tmpnam
tmpnam_r
ungetc
unsetenv
valloc
vcf_format
vcf_hdr_read
vcf_hdr_write
vcf_parse
vcf_read
vcf_write
vdprintf
vfprintf
vfscanf
vprintf
vscanf
vsnprintf
vsprintf
vsscanf
wcstombs
wctomb

Type Definitions

BGZF
Enum___codecvt_result
Enum_cram_option
Enum_htsCompression
Enum_htsExactFormat
Enum_htsFormatCategory
Enum_sam_fields
FILE
_G_fpos64_t
_G_fpos_t
_IO_FILE
_IO_lock_t
__FILE
__WAIT_STATUS
__blkcnt64_t
__blkcnt_t
__blksize_t
__builtin_va_list
__caddr_t
__clock_t
__clockid_t
__compar_fn_t
__daddr_t
__dev_t
__fd_mask
__fsblkcnt64_t
__fsblkcnt_t
__fsfilcnt64_t
__fsfilcnt_t
__fsid_t
__fsword_t
__gid_t
__gnuc_va_list
__id_t
__ino64_t
__ino_t
__int128_t
__int16_t
__int32_t
__int64_t
__int8_t
__intptr_t
__io_close_fn
__io_read_fn
__io_seek_fn
__io_write_fn
__key_t
__locale_t
__loff_t
__mbstate_t
__mode_t
__nlink_t
__off64_t
__off_t
__pid_t
__pthread_list_t
__qaddr_t
__quad_t
__rlim64_t
__rlim_t
__sig_atomic_t
__sigset_t
__socklen_t
__ssize_t
__suseconds_t
__syscall_slong_t
__syscall_ulong_t
__time_t
__timer_t
__u_char
__u_int
__u_long
__u_quad_t
__u_short
__uid_t
__uint128_t
__uint16_t
__uint32_t
__uint64_t
__uint8_t
__useconds_t
__va_list_tag
_uint
bcf1_t
bcf_dec_t
bcf_fmt_t
bcf_hdr_t
bcf_hrec_t
bcf_idinfo_t
bcf_idpair_t
bcf_info_t
blkcnt_t
blksize_t
caddr_t
clock_t
clockid_t
daddr_t
dev_t
div_t
fd_mask
fd_set
fpos_t
fsblkcnt_t
fsfilcnt_t
fsid_t
gid_t
htsFile
htsFormat
hts_id2name_f
hts_idx_t
hts_itr_query_func
hts_itr_t
hts_name2id_f
hts_pair64_t
hts_readrec_func
id_t
ino_t
int16_t
int32_t
int64_t
int8_t
int_fast16_t
int_fast32_t
int_fast64_t
int_fast8_t
int_least16_t
int_least32_t
int_least64_t
int_least8_t
intmax_t
intptr_t
key_t
ks_tokaux_t
kstring_t
ldiv_t
lldiv_t
locale_t
loff_t
mode_t
nlink_t
off_t
pid_t
pthread_attr_t
pthread_barrier_t
pthread_barrierattr_t
pthread_cond_t
pthread_condattr_t
pthread_key_t
pthread_mutex_t
pthread_mutexattr_t
pthread_once_t
pthread_rwlock_t
pthread_rwlockattr_t
pthread_spinlock_t
pthread_t
ptrdiff_t
quad_t
register_t
sigset_t
size_t
ssize_t
suseconds_t
time_t
timer_t
u_char
u_int
u_int16_t
u_int32_t
u_int64_t
u_int8_t
u_long
u_quad_t
u_short
uid_t
uint16_t
uint32_t
uint64_t
uint8_t
uint_fast16_t
uint_fast32_t
uint_fast64_t
uint_fast8_t
uint_least16_t
uint_least32_t
uint_least64_t
uint_least8_t
uintmax_t
uintptr_t
ulong
ushort
va_list
variant_t
vcfFile
wchar_t