rust-htslib 0.28.0

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Documentation
# This file is automatically @generated by Cargo.
# It is not intended for manual editing.
[[package]]
name = "aho-corasick"
version = "0.7.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8716408b8bc624ed7f65d223ddb9ac2d044c0547b6fa4b0d554f3a9540496ada"
dependencies = [
 "memchr",
]

[[package]]
name = "ansi_term"
version = "0.11.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ee49baf6cb617b853aa8d93bf420db2383fab46d314482ca2803b40d5fde979b"
dependencies = [
 "winapi",
]

[[package]]
name = "autocfg"
version = "1.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f8aac770f1885fd7e387acedd76065302551364496e46b3dd00860b2f8359b9d"

[[package]]
name = "bincode"
version = "1.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5753e2a71534719bf3f4e57006c3a4f0d2c672a4b676eec84161f763eca87dbf"
dependencies = [
 "byteorder",
 "serde",
]

[[package]]
name = "bindgen"
version = "0.53.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6bb26d6a69a335b8cb0e7c7e9775cd5666611dc50a37177c3f2cedcfc040e8c8"
dependencies = [
 "bitflags",
 "cexpr",
 "cfg-if",
 "clang-sys",
 "lazy_static",
 "lazycell",
 "peeking_take_while",
 "proc-macro2",
 "quote",
 "regex",
 "rustc-hash",
 "shlex",
]

[[package]]
name = "bio-types"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0fff2d34cf375fe6e66400b3669e6d10d154aece39ac4898523b2e65abc0b38c"
dependencies = [
 "derive-new",
 "lazy_static",
 "quick-error",
 "regex",
 "serde",
 "serde_derive",
]

[[package]]
name = "bitflags"
version = "1.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "cf1de2fe8c75bc145a2f577add951f8134889b4795d47466a54a5c846d691693"

[[package]]
name = "byteorder"
version = "1.3.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "08c48aae112d48ed9f069b33538ea9e3e90aa263cfa3d1c24309612b1f7472de"

[[package]]
name = "bzip2-sys"
version = "0.1.8+1.0.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "05305b41c5034ff0e93937ac64133d109b5a2660114ec45e9760bc6816d83038"
dependencies = [
 "cc",
 "libc",
]

[[package]]
name = "cc"
version = "1.0.50"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "95e28fa049fda1c330bcf9d723be7663a899c4679724b34c81e9f5a326aab8cd"

[[package]]
name = "cexpr"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f4aedb84272dbe89af497cf81375129abda4fc0a9e7c5d317498c15cc30c0d27"
dependencies = [
 "nom",
]

[[package]]
name = "cfg-if"
version = "0.1.10"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4785bdd1c96b2a846b2bd7cc02e86b6b3dbf14e7e53446c4f54c92a361040822"

[[package]]
name = "clang-sys"
version = "0.29.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f92986241798376849e1a007827041fed9bb36195822c2049d18e174420e0534"
dependencies = [
 "glob",
 "libc",
 "libloading",
]

[[package]]
name = "ctor"
version = "0.1.13"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "47c5e5ac752e18207b12e16b10631ae5f7f68f8805f335f9b817ead83d9ffce1"
dependencies = [
 "quote",
 "syn",
]

[[package]]
name = "curl-sys"
version = "0.4.30+curl-7.69.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "923b38e423a8f47a4058e96f2a1fa2865a6231097ee860debd678d244277d50c"
dependencies = [
 "cc",
 "libc",
 "libz-sys",
 "openssl-sys",
 "pkg-config",
 "vcpkg",
 "winapi",
]

[[package]]
name = "custom_derive"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ef8ae57c4978a2acd8b869ce6b9ca1dfe817bff704c220209fdef2c0b75a01b9"

[[package]]
name = "derive-new"
version = "0.5.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "71f31892cd5c62e414316f2963c5689242c43d8e7bbcaaeca97e5e28c95d91d9"
dependencies = [
 "proc-macro2",
 "quote",
 "syn",
]

[[package]]
name = "difference"
version = "2.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "524cbf6897b527295dff137cec09ecf3a05f4fddffd7dfcd1585403449e74198"

[[package]]
name = "doc-comment"
version = "0.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "fea41bba32d969b513997752735605054bc0dfa92b4c56bf1189f2e174be7a10"

[[package]]
name = "either"
version = "1.5.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bb1f6b1ce1c140482ea30ddd3335fc0024ac7ee112895426e0a629a6c20adfe3"

[[package]]
name = "fs-utils"
version = "1.1.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6fc7a9dc005c944c98a935e7fd626faf5bf7e5a609f94bc13e42fc4a02e52593"
dependencies = [
 "quick-error",
]

[[package]]
name = "fuchsia-cprng"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a06f77d526c1a601b7c4cdd98f54b5eaabffc14d5f2f0296febdc7f357c6d3ba"

[[package]]
name = "glob"
version = "0.3.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9b919933a397b79c37e33b77bb2aa3dc8eb6e165ad809e58ff75bc7db2e34574"

[[package]]
name = "hts-sys"
version = "1.10.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a9985b595db4b1dc0972a475fb2ea79fece907b6f5aa193e32e71f469c02ae67"
dependencies = [
 "bindgen",
 "bzip2-sys",
 "cc",
 "curl-sys",
 "fs-utils",
 "glob",
 "libc",
 "libz-sys",
 "lzma-sys",
 "openssl-sys",
]

[[package]]
name = "idna"
version = "0.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "02e2673c30ee86b5b96a9cb52ad15718aa1f966f5ab9ad54a8b95d5ca33120a9"
dependencies = [
 "matches",
 "unicode-bidi",
 "unicode-normalization",
]

[[package]]
name = "ieee754"
version = "0.2.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9007da9cacbd3e6343da136e98b0d2df013f553d35bdec8b518f07bea768e19c"

[[package]]
name = "itertools"
version = "0.8.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f56a2d0bc861f9165be4eb3442afd3c236d8a98afd426f65d92324ae1091a484"
dependencies = [
 "either",
]

[[package]]
name = "itoa"
version = "0.4.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b8b7a7c0c47db5545ed3fef7468ee7bb5b74691498139e4b3f6a20685dc6dd8e"

[[package]]
name = "lazy_static"
version = "1.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646"

[[package]]
name = "lazycell"
version = "1.2.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b294d6fa9ee409a054354afc4352b0b9ef7ca222c69b8812cbea9e7d2bf3783f"

[[package]]
name = "libc"
version = "0.2.68"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dea0c0405123bba743ee3f91f49b1c7cfb684eef0da0a50110f758ccf24cdff0"

[[package]]
name = "libloading"
version = "0.5.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f2b111a074963af1d37a139918ac6d49ad1d0d5e47f72fd55388619691a7d753"
dependencies = [
 "cc",
 "winapi",
]

[[package]]
name = "libz-sys"
version = "1.0.25"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2eb5e43362e38e2bca2fd5f5134c4d4564a23a5c28e9b95411652021a8675ebe"
dependencies = [
 "cc",
 "libc",
 "pkg-config",
 "vcpkg",
]

[[package]]
name = "linear-map"
version = "1.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "bfae20f6b19ad527b550c223fddc3077a547fc70cda94b9b566575423fd303ee"

[[package]]
name = "lzma-sys"
version = "0.1.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "53e48818fd597d46155132bbbb9505d6d1b3d360b4ee25cfa91c406f8a90fe91"
dependencies = [
 "cc",
 "libc",
 "pkg-config",
]

[[package]]
name = "matches"
version = "0.1.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7ffc5c5338469d4d3ea17d269fa8ea3512ad247247c30bd2df69e68309ed0a08"

[[package]]
name = "memchr"
version = "2.3.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3728d817d99e5ac407411fa471ff9800a778d88a24685968b36824eaf4bee400"

[[package]]
name = "newtype_derive"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac8cd24d9f185bb7223958d8c1ff7a961b74b1953fd05dba7cc568a63b3861ec"
dependencies = [
 "rustc_version",
]

[[package]]
name = "nom"
version = "5.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0b471253da97532da4b61552249c521e01e736071f71c1a4f7ebbfbf0a06aad6"
dependencies = [
 "memchr",
 "version_check",
]

[[package]]
name = "openssl-sys"
version = "0.9.54"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1024c0a59774200a555087a6da3f253a9095a5f344e353b212ac4c8b8e450986"
dependencies = [
 "autocfg",
 "cc",
 "libc",
 "pkg-config",
 "vcpkg",
]

[[package]]
name = "output_vt100"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "53cdc5b785b7a58c5aad8216b3dfa114df64b0b06ae6e1501cef91df2fbdf8f9"
dependencies = [
 "winapi",
]

[[package]]
name = "peeking_take_while"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "19b17cddbe7ec3f8bc800887bab5e717348c95ea2ca0b1bf0837fb964dc67099"

[[package]]
name = "percent-encoding"
version = "2.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4fd5641d01c8f18a23da7b6fe29298ff4b55afcccdf78973b24cf3175fee32e"

[[package]]
name = "pkg-config"
version = "0.3.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "05da548ad6865900e60eaba7f589cc0783590a92e940c26953ff81ddbab2d677"

[[package]]
name = "pretty_assertions"
version = "0.6.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3f81e1644e1b54f5a68959a29aa86cde704219254669da328ecfdf6a1f09d427"
dependencies = [
 "ansi_term",
 "ctor",
 "difference",
 "output_vt100",
]

[[package]]
name = "proc-macro2"
version = "1.0.9"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "6c09721c6781493a2a492a96b5a5bf19b65917fe6728884e7c44dd0c60ca3435"
dependencies = [
 "unicode-xid",
]

[[package]]
name = "quick-error"
version = "1.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "a1d01941d82fa2ab50be1e79e6714289dd7cde78eba4c074bc5a4374f650dfe0"

[[package]]
name = "quote"
version = "1.0.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "2bdc6c187c65bca4260c9011c9e3132efe4909da44726bad24cf7572ae338d7f"
dependencies = [
 "proc-macro2",
]

[[package]]
name = "rand"
version = "0.4.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "552840b97013b1a26992c11eac34bdd778e464601a4c2054b5f0bff7c6761293"
dependencies = [
 "fuchsia-cprng",
 "libc",
 "rand_core 0.3.1",
 "rdrand",
 "winapi",
]

[[package]]
name = "rand_core"
version = "0.3.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7a6fdeb83b075e8266dcc8762c22776f6877a63111121f5f8c7411e5be7eed4b"
dependencies = [
 "rand_core 0.4.2",
]

[[package]]
name = "rand_core"
version = "0.4.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9c33a3c44ca05fa6f1807d8e6743f3824e8509beca625669633be0acbdf509dc"

[[package]]
name = "rdrand"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "678054eb77286b51581ba43620cc911abf02758c91f93f479767aed0f90458b2"
dependencies = [
 "rand_core 0.3.1",
]

[[package]]
name = "regex"
version = "1.3.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7f6946991529684867e47d86474e3a6d0c0ab9b82d5821e314b1ede31fa3a4b3"
dependencies = [
 "aho-corasick",
 "memchr",
 "regex-syntax",
 "thread_local",
]

[[package]]
name = "regex-syntax"
version = "0.6.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7fe5bd57d1d7414c6b5ed48563a2c855d995ff777729dcd91c369ec7fea395ae"

[[package]]
name = "remove_dir_all"
version = "0.5.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "4a83fa3702a688b9359eccba92d153ac33fd2e8462f9e0e3fdf155239ea7792e"
dependencies = [
 "winapi",
]

[[package]]
name = "rust-htslib"
version = "0.28.0"
dependencies = [
 "bincode",
 "bio-types",
 "bitflags",
 "custom_derive",
 "hts-sys",
 "ieee754",
 "itertools",
 "lazy_static",
 "libc",
 "linear-map",
 "newtype_derive",
 "pretty_assertions",
 "regex",
 "serde",
 "serde_bytes",
 "serde_json",
 "snafu",
 "tempdir",
 "url",
]

[[package]]
name = "rustc-hash"
version = "1.1.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2"

[[package]]
name = "rustc_version"
version = "0.1.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c5f5376ea5e30ce23c03eb77cbe4962b988deead10910c372b226388b594c084"
dependencies = [
 "semver",
]

[[package]]
name = "ryu"
version = "1.0.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "535622e6be132bccd223f4bb2b8ac8d53cda3c7a6394944d3b2b33fb974f9d76"

[[package]]
name = "semver"
version = "0.1.20"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d4f410fedcf71af0345d7607d246e7ad15faaadd49d240ee3b24e5dc21a820ac"

[[package]]
name = "serde"
version = "1.0.105"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e707fbbf255b8fc8c3b99abb91e7257a622caeb20a9818cbadbeeede4e0932ff"

[[package]]
name = "serde_bytes"
version = "0.11.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "325a073952621257820e7a3469f55ba4726d8b28657e7e36653d1c36dc2c84ae"
dependencies = [
 "serde",
]

[[package]]
name = "serde_derive"
version = "1.0.105"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac5d00fc561ba2724df6758a17de23df5914f20e41cb00f94d5b7ae42fffaff8"
dependencies = [
 "proc-macro2",
 "quote",
 "syn",
]

[[package]]
name = "serde_json"
version = "1.0.48"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "9371ade75d4c2d6cb154141b9752cf3781ec9c05e0e5cf35060e1e70ee7b9c25"
dependencies = [
 "itoa",
 "ryu",
 "serde",
]

[[package]]
name = "shlex"
version = "0.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7fdf1b9db47230893d76faad238fd6097fd6d6a9245cd7a4d90dbd639536bbd2"

[[package]]
name = "smallvec"
version = "1.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5c2fb2ec9bcd216a5b0d0ccf31ab17b5ed1d627960edff65bbe95d3ce221cefc"

[[package]]
name = "snafu"
version = "0.6.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "41207ca11f96a62cd34e6b7fdf73d322b25ae3848eb9d38302169724bb32cf27"
dependencies = [
 "doc-comment",
 "snafu-derive",
]

[[package]]
name = "snafu-derive"
version = "0.6.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "b5d1c41856cbfa99befda5034c72539dd9d7dd6f3e61058bdb804ac40715bc2a"
dependencies = [
 "proc-macro2",
 "quote",
 "syn",
]

[[package]]
name = "syn"
version = "1.0.17"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "0df0eb663f387145cab623dea85b09c2c5b4b0aef44e945d928e682fce71bb03"
dependencies = [
 "proc-macro2",
 "quote",
 "unicode-xid",
]

[[package]]
name = "tempdir"
version = "0.3.7"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "15f2b5fb00ccdf689e0149d1b1b3c03fead81c2b37735d812fa8bddbbf41b6d8"
dependencies = [
 "rand",
 "remove_dir_all",
]

[[package]]
name = "thread_local"
version = "1.0.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "d40c6d1b69745a6ec6fb1ca717914848da4b44ae29d9b3080cbee91d72a69b14"
dependencies = [
 "lazy_static",
]

[[package]]
name = "unicode-bidi"
version = "0.3.4"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "49f2bd0c6468a8230e1db229cff8029217cf623c767ea5d60bfbd42729ea54d5"
dependencies = [
 "matches",
]

[[package]]
name = "unicode-normalization"
version = "0.1.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5479532badd04e128284890390c1e876ef7a993d0570b3597ae43dfa1d59afa4"
dependencies = [
 "smallvec",
]

[[package]]
name = "unicode-xid"
version = "0.2.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "826e7639553986605ec5979c7dd957c7895e93eabed50ab2ffa7f6128a75097c"

[[package]]
name = "url"
version = "2.1.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "829d4a8476c35c9bf0bbce5a3b23f4106f79728039b726d292bb93bc106787cb"
dependencies = [
 "idna",
 "matches",
 "percent-encoding",
]

[[package]]
name = "vcpkg"
version = "0.2.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3fc439f2794e98976c88a2a2dafce96b930fe8010b0a256b3c2199a773933168"

[[package]]
name = "version_check"
version = "0.9.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "078775d0255232fb988e6fccf26ddc9d1ac274299aaedcedce21c6f72cc533ce"

[[package]]
name = "winapi"
version = "0.3.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "8093091eeb260906a183e6ae1abdba2ef5ef2257a21801128899c3fc699229c6"
dependencies = [
 "winapi-i686-pc-windows-gnu",
 "winapi-x86_64-pc-windows-gnu",
]

[[package]]
name = "winapi-i686-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"

[[package]]
name = "winapi-x86_64-pc-windows-gnu"
version = "0.4.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"