[−][src]Struct rust_htslib::bam::IndexedReader
Methods
impl IndexedReader
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pub fn from_path<P: AsRef<Path>>(
path: P
) -> Result<Self, IndexedReaderPathError>
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path: P
) -> Result<Self, IndexedReaderPathError>
pub fn from_path_and_index<P: AsRef<Path>>(
path: P,
index_path: P
) -> Result<Self, IndexedReaderPathError>
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path: P,
index_path: P
) -> Result<Self, IndexedReaderPathError>
pub fn from_url(url: &Url) -> Result<Self, IndexedReaderError>
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pub fn fetch(&mut self, tid: u32, beg: u32, end: u32) -> Result<(), FetchError>
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pub fn set_reference<P: AsRef<Path>>(
&mut self,
path: P
) -> Result<(), ReferencePathError>
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&mut self,
path: P
) -> Result<(), ReferencePathError>
Trait Implementations
impl Read for IndexedReader
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fn read(&mut self, record: &mut Record) -> Result<(), ReadError>
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ⓘImportant traits for Records<'a, R>fn records(&mut self) -> Records<Self>
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ⓘImportant traits for Records<'a, R>
Iterator over the records of the fetched region.
Note that, while being convenient, this is less efficient than pre-allocating a
Record
and reading into it with the read
method, since every iteration involves
the allocation of a new Record
.
ⓘImportant traits for Pileups<'a, R>fn pileup(&mut self) -> Pileups<Self>
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ⓘImportant traits for Pileups<'a, R>
fn htsfile(&self) -> *mut htsFile
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fn header(&self) -> &HeaderView
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fn seek(&mut self, offset: i64) -> Result<(), SeekError>
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Seek to the given virtual offset in the file
fn tell(&self) -> i64
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Report the current virtual offset
fn set_threads(&mut self, n_threads: usize) -> Result<(), ThreadingError>
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Activate multi-threaded BAM read support in htslib. This should permit faster reading of large BAM files. Read more
impl Drop for IndexedReader
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impl Send for IndexedReader
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impl Debug for IndexedReader
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Auto Trait Implementations
impl !Sync for IndexedReader
Blanket Implementations
impl<T> From for T
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impl<T, U> Into for T where
U: From<T>,
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U: From<T>,
impl<T, U> TryFrom for T where
U: Into<T>,
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U: Into<T>,
type Error = Infallible
The type returned in the event of a conversion error.
fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>
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impl<T, U> TryInto for T where
U: TryFrom<T>,
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U: TryFrom<T>,
type Error = <U as TryFrom<T>>::Error
The type returned in the event of a conversion error.
fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>
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impl<T> Borrow for T where
T: ?Sized,
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T: ?Sized,
impl<T> BorrowMut for T where
T: ?Sized,
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T: ?Sized,
fn borrow_mut(&mut self) -> &mut T
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impl<T> Any for T where
T: 'static + ?Sized,
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T: 'static + ?Sized,