Struct rnapkin::utils::ParsedInput

pub struct ParsedInput {
    pub sequence: Option<String>,
    pub secondary_structure: Option<String>,
    pub rna_name: Option<String>,
    pub highlight: Option<String>,
}

Fields

sequence: Option<String>

secondary_structure: Option<String>

rna_name: Option<String>

highlight: Option<String>

Implementations

impl ParsedInput

pub fn from_file(input_file: &str) -> Result<Self>

reads file and passes it to Self::parse

pub fn from_pipe() -> Result<Self>

reads stdin and passes it to Self::parse

pub fn parse<L>(lines: &mut L) -> Result<Self>where L: Iterator<Item = String>,

parses user provided input reads lines and checks the first byte: interprets A-Ua-u as nucleotides interprets .() as secondary structure interprets > as name ignores everything else

Trait Implementations

impl Clone for ParsedInput

fn clone(&self) -> ParsedInput

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ParsedInput

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq<ParsedInput> for ParsedInput

fn eq(&self, other: &ParsedInput) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for ParsedInput

impl StructuralEq for ParsedInput

impl StructuralPartialEq for ParsedInput