[−][src]Struct phylofold::StaFeParams

pub struct StaFeParams {
    pub ba_score_mat: HashMap<(u16, u16), f64, BuildHasherDefault<FxHasher>>,
    pub bpa_score_mat: HashMap<(u16, u16, u16, u16), f64, BuildHasherDefault<FxHasher>>,
    pub exp_ba_score_mat: HashMap<(u16, u16), f64, BuildHasherDefault<FxHasher>>,
    pub exp_bpa_score_mat: HashMap<(u16, u16, u16, u16), f64, BuildHasherDefault<FxHasher>>,
    pub opening_gap_penalty: f64,
    pub extending_gap_penalty: f64,
    pub exp_opening_gap_penalty: f64,
    pub exp_extending_gap_penalty: f64,
    pub is_logsumexp_applied: bool,
    // some fields omitted
}

Fields

ba_score_mat: HashMap<(u16, u16), f64, BuildHasherDefault<FxHasher>>bpa_score_mat: HashMap<(u16, u16, u16, u16), f64, BuildHasherDefault<FxHasher>>exp_ba_score_mat: HashMap<(u16, u16), f64, BuildHasherDefault<FxHasher>>exp_bpa_score_mat: HashMap<(u16, u16, u16, u16), f64, BuildHasherDefault<FxHasher>>opening_gap_penalty: f64extending_gap_penalty: f64exp_opening_gap_penalty: f64exp_extending_gap_penalty: f64is_logsumexp_applied: bool

Methods

impl StaFeParams[src]

pub fn origin() -> StaFeParams[src]

pub fn new(
    seq_pair: &(&[usize], &[usize]),
    seq_len_pair: &(usize, usize),
    max_bp_span_pair: &(u16, u16),
    max_gap_num: u16,
    max_gap_num_4_il: u16,
    bpp_mat_pair: &(&HashMap<(u16, u16), f64, BuildHasherDefault<FxHasher>>, &HashMap<(u16, u16), f64, BuildHasherDefault<FxHasher>>),
    max_free_energy: f64,
    opening_gap_penalty: f64,
    extending_gap_penalty: f64,
    exp_opening_gap_penalty: f64,
    exp_extending_gap_penalty: f64
) -> StaFeParams[src]

Auto Trait Implementations

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impl<T> Any for T where
    T: 'static + ?Sized, [src]

impl<T> Borrow<T> for T where
    T: ?Sized, [src]

impl<T> BorrowMut<T> for T where
    T: ?Sized, [src]

impl<T> From<T> for T[src]

impl<T, U> Into<U> for T where
    U: From<T>, [src]

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    U: Into<T>, [src]

type Error = Infallible

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impl<T, U> TryInto<U> for T where
    U: TryFrom<T>, [src]

type Error = <U as TryFrom<T>>::Error

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