Struct noodles::tabix::index::builder::Builder

pub struct Builder { /* fields omitted */ }

A tabix index builder.

Implementations

impl Builder

pub fn set_header(self, header: Header) -> Builder

Sets a header.

Examples

use noodles_tabix as tabix;
let header = tabix::index::Header::default();
let index = tabix::Index::builder().set_header(header.clone()).build();
assert_eq!(index.header(), &header);

pub fn set_reference_sequence_names(
    self,
    reference_sequence_names: IndexSet<String, RandomState>
) -> Builder

Sets reference sequence names.

Examples

use noodles_tabix::{self as tabix, index::ReferenceSequenceNames};

let reference_sequence_names: ReferenceSequenceNames = vec![String::from("sq0")]
    .into_iter()
    .collect();

let index = tabix::Index::builder()
    .set_reference_sequence_names(reference_sequence_names.clone())
    .build();

assert_eq!(index.reference_sequence_names(), &reference_sequence_names);

pub fn set_reference_sequences(
    self,
    reference_sequences: Vec<ReferenceSequence, Global>
) -> Builder

Sets reference sequences.

Examples

use noodles_csi::BinningIndex;
use noodles_tabix::{self as tabix, index::ReferenceSequence};

let reference_sequences = vec![ReferenceSequence::new(Vec::new(), Vec::new(), None)];

let index = tabix::Index::builder()
    .set_reference_sequences(reference_sequences)
    .build();

assert_eq!(index.reference_sequences().len(), 1);

pub fn set_unmapped_read_count(self, unmapped_read_count: u64) -> Builder

👎 Deprecated since 0.3.0:

Use set_unplaced_unmapped_record_count instead.

Sets an unmapped read count.

Examples

use noodles_tabix as tabix;

let index = tabix::Index::builder()
    .set_unmapped_read_count(21)
    .build();

assert_eq!(index.unmapped_read_count(), Some(21));

pub fn set_unplaced_unmapped_record_count(
    self,
    unplaced_unmapped_record_count: u64
) -> Builder

Sets an unplaced, unmapped record count.

Examples

use noodles_csi::BinningIndex;
use noodles_tabix as tabix;

let index = tabix::Index::builder()
    .set_unplaced_unmapped_record_count(21)
    .build();

assert_eq!(index.unplaced_unmapped_record_count(), Some(21));

pub fn build(self) -> Index

Builds a tabix index.

Examples

use noodles_tabix as tabix;
let index = tabix::Index::builder().build();

Trait Implementations

impl Default for Builder

pub fn default() -> Builder

Returns the “default value” for a type.