Enum noodles::cram::record::feature::Feature[−][src]

pub enum Feature {
    Bases(i32, Vec<u8, Global>),
    Scores(i32, Vec<u8, Global>),
    ReadBase(i32, u8, u8),
    Substitution(i32, u8),
    Insertion(i32, Vec<u8, Global>),
    Deletion(i32, i32),
    InsertBase(i32, u8),
    QualityScore(i32, u8),
    ReferenceSkip(i32, i32),
    SoftClip(i32, Vec<u8, Global>),
    Padding(i32, i32),
    HardClip(i32, i32),
}

Expand description

A CRAM record feature.

Variants

Bases(i32, Vec<u8, Global>)

A stretch of bases (position, bases).

Tuple Fields of Bases

0: i321: Vec<u8, Global>

Scores(i32, Vec<u8, Global>)

A stretch of quality scores (position, quality scores).

Tuple Fields of Scores

0: i321: Vec<u8, Global>

ReadBase(i32, u8, u8)

A base-quality score pair (position, base, quality score).

Tuple Fields of ReadBase

0: i321: u82: u8

Substitution(i32, u8)

A base substitution (position, code).

Tuple Fields of Substitution

0: i321: u8

Insertion(i32, Vec<u8, Global>)

Inserted bases (position, bases).

Tuple Fields of Insertion

0: i321: Vec<u8, Global>

Deletion(i32, i32)

A number of deleted bases (position, length).

Tuple Fields of Deletion

0: i321: i32

InsertBase(i32, u8)

A single inserted base (position, base).

Tuple Fields of InsertBase

0: i321: u8

QualityScore(i32, u8)

A single quality score (position, score).

Tuple Fields of QualityScore

0: i321: u8

ReferenceSkip(i32, i32)

A number of skipped bases (position, length).

Tuple Fields of ReferenceSkip

0: i321: i32

SoftClip(i32, Vec<u8, Global>)

Soft clipped bases (position, bases).

Tuple Fields of SoftClip

0: i321: Vec<u8, Global>

Padding(i32, i32)

A number of padded bases (position, length).

Tuple Fields of Padding

0: i321: i32

HardClip(i32, i32)

A number of hard clipped bases (position, length).

Tuple Fields of HardClip

0: i321: i32

Implementations

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impl Feature

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pub fn code(&self) -> Code

Returns the feature code.

Examples

use noodles_cram::record::{feature::Code, Feature};
let feature = Feature::InsertBase(8, b'A');
assert_eq!(feature.code(), Code::InsertBase);

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pub fn position(&self) -> i32

Returns the feature position.

Examples

use noodles_cram::record::Feature;
let feature = Feature::InsertBase(8, b'A');
assert_eq!(feature.position(), 8);

Trait Implementations

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impl Clone for Feature

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pub fn clone(&self) -> Feature

Returns a copy of the value. Read more

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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

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impl Debug for Feature

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pub fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter. Read more

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impl PartialEq<Feature> for Feature

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pub fn eq(&self, other: &Feature) -> bool

This method tests for self and other values to be equal, and is used by ==. Read more

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pub fn ne(&self, other: &Feature) -> bool

This method tests for !=.

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impl Eq for Feature

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impl StructuralEq for Feature

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impl StructuralPartialEq for Feature

Auto Trait Implementations

impl RefUnwindSafe for Feature

impl Send for Feature

impl Sync for Feature

impl Unpin for Feature

impl UnwindSafe for Feature

Blanket Implementations

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impl<T> Any for T where
T: 'static + ?Sized,

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pub fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

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impl<T> Borrow<T> for T where
T: ?Sized,

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pub fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

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impl<T> BorrowMut<T> for T where
T: ?Sized,

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pub fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

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impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

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pub fn equivalent(&self, key: &K) -> bool

Compare self to key and return true if they are equal.

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impl<T> From<T> for T

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pub fn from(t: T) -> T

Performs the conversion.

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impl<T, U> Into for T where
U: From<T>,

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pub fn into(self) -> U

Performs the conversion.

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impl<T> Same<T> for T

type Output = T

Should always be Self

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impl<T> ToOwned for T where
T: Clone,

type Owned = T

The resulting type after obtaining ownership.

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pub fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

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pub fn clone_into(&self, target: &mut T)

🔬 This is a nightly-only experimental API. (toowned_clone_into)

recently added

Uses borrowed data to replace owned data, usually by cloning. Read more

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impl<T, U> TryFrom for T where
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

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pub fn try_from(value: U) -> Result<T, <T as TryFrom>::Error>

Performs the conversion.

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impl<T, U> TryInto for T where
U: TryFrom<T>,

type Error = >::Error

The type returned in the event of a conversion error.

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pub fn try_into(self) -> Result<U, >::Error>

Performs the conversion.

Enum noodles::cram::record::feature::Feature[−][src]

Variants

Tuple Fields of Bases

Tuple Fields of Scores

Tuple Fields of ReadBase

Tuple Fields of Substitution

Tuple Fields of Insertion

Tuple Fields of Deletion

Tuple Fields of InsertBase

Tuple Fields of QualityScore

Tuple Fields of ReferenceSkip

Tuple Fields of SoftClip

Tuple Fields of Padding

Tuple Fields of HardClip

Implementations

impl Feature

pub fn code(&self) -> Code

Examples

pub fn position(&self) -> i32

Examples

Trait Implementations

impl Clone for Feature

pub fn clone(&self) -> Feature

fn clone_from(&mut self, source: &Self)

impl Debug for Feature

pub fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

impl PartialEq<Feature> for Feature

pub fn eq(&self, other: &Feature) -> bool

pub fn ne(&self, other: &Feature) -> bool

impl Eq for Feature

impl StructuralEq for Feature

impl StructuralPartialEq for Feature

Auto Trait Implementations

impl RefUnwindSafe for Feature

impl Send for Feature

impl Sync for Feature

impl Unpin for Feature

impl UnwindSafe for Feature

Blanket Implementations

impl<T> Any for T where T: 'static + ?Sized,

pub fn type_id(&self) -> TypeId

impl<T> Borrow<T> for T where T: ?Sized,

pub fn borrow(&self) -> &T

impl<T> BorrowMut<T> for T where T: ?Sized,

pub fn borrow_mut(&mut self) -> &mut T

impl<Q, K> Equivalent<K> for Q where Q: Eq + ?Sized, K: Borrow<Q> + ?Sized,

pub fn equivalent(&self, key: &K) -> bool

impl<T> From<T> for T

pub fn from(t: T) -> T

impl<T, U> Into<U> for T where U: From<T>,

pub fn into(self) -> U

impl<T> Same<T> for T

type Output = T

impl<T> ToOwned for T where T: Clone,

type Owned = T

pub fn to_owned(&self) -> T

pub fn clone_into(&self, target: &mut T)

impl<T, U> TryFrom<U> for T where U: Into<T>,

type Error = Infallible

pub fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for T where U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

pub fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

impl<T> Any for T where
T: 'static + ?Sized,

impl<T> Borrow<T> for T where
T: ?Sized,

impl<T> BorrowMut<T> for T where
T: ?Sized,

impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

impl<T, U> Into<U> for T where
U: From<T>,

impl<T> ToOwned for T where
T: Clone,

impl<T, U> TryFrom<U> for T where
U: Into<T>,

impl<T, U> TryInto<U> for T where
U: TryFrom<T>,