Enum noodles_cram::record::feature::Feature

pub enum Feature {
    Bases(i32, Vec<u8>),
    Scores(i32, Vec<u8>),
    ReadBase(i32, u8, u8),
    Substitution(i32, u8),
    Insertion(i32, Vec<u8>),
    Deletion(i32, i32),
    InsertBase(i32, u8),
    QualityScore(i32, u8),
    ReferenceSkip(i32, i32),
    SoftClip(i32, Vec<u8>),
    Padding(i32, i32),
    HardClip(i32, i32),
}

A CRAM record feature.

Variants

Bases(i32, Vec<u8>)

Tuple Fields

0: i32

1: Vec<u8>

A stretch of bases (position, bases).

Scores(i32, Vec<u8>)

Tuple Fields

0: i32

1: Vec<u8>

A stretch of quality scores (position, quality scores).

ReadBase(i32, u8, u8)

Tuple Fields

0: i32

1: u8

2: u8

A base-quality score pair (position, base, quality score).

Substitution(i32, u8)

Tuple Fields

0: i32

1: u8

A base substitution (position, code).

Insertion(i32, Vec<u8>)

Tuple Fields

0: i32

1: Vec<u8>

Inserted bases (position, bases).

Deletion(i32, i32)

Tuple Fields

0: i32

1: i32

A number of deleted bases (position, length).

InsertBase(i32, u8)

Tuple Fields

0: i32

1: u8

A single inserted base (position, base).

QualityScore(i32, u8)

Tuple Fields

0: i32

1: u8

A single quality score (position, score).

ReferenceSkip(i32, i32)

Tuple Fields

0: i32

1: i32

A number of skipped bases (position, length).

SoftClip(i32, Vec<u8>)

Tuple Fields

0: i32

1: Vec<u8>

Soft clipped bases (position, bases).

Padding(i32, i32)

Tuple Fields

0: i32

1: i32

A number of padded bases (position, length).

HardClip(i32, i32)

Tuple Fields

0: i32

1: i32

A number of hard clipped bases (position, length).

Implementations

impl Feature

pub fn code(&self) -> Code

Returns the feature code.

Examples

use noodles_cram::record::{feature::Code, Feature};
let feature = Feature::InsertBase(8, b'A');
assert_eq!(feature.code(), Code::InsertBase);

pub fn position(&self) -> i32

Returns the feature position.

Examples

use noodles_cram::record::Feature;
let feature = Feature::InsertBase(8, b'A');
assert_eq!(feature.position(), 8);

Trait Implementations

impl Clone for Feature

fn clone(&self) -> Feature

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Feature

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq<Feature> for Feature

fn eq(&self, other: &Feature) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Feature) -> bool

This method tests for !=.

impl Eq for Feature

impl StructuralEq for Feature

impl StructuralPartialEq for Feature