Struct nifti::volume::streamed::StreamedNiftiVolume

pub struct StreamedNiftiVolume<R> { /* fields omitted */ }

A NIfTI-1 volume instance that is read slice by slice from a byte stream.

See the module-level documentation for more details.

Implementations

impl StreamedNiftiVolume<BufReader<File>>

pub fn from_file<P>(path: P, header: &NiftiHeader) -> Result<Self> where
    P: AsRef<Path>, 

Read a NIFTI volume from an uncompressed file. The header and expected byte order of the volume's data must be known in advance. It is also expected that the file starts with the first voxels of the volume, not with the extensions.

impl<R> StreamedNiftiVolume<R> where
    R: Read, 

pub fn from_reader(source: R, header: &NiftiHeader) -> Result<Self>

Read a NIFTI volume from a stream of raw voxel data. The header and expected byte order of the volume's data must be known in advance. It is also expected that the following bytes represent the first voxels of the volume (and not part of the extensions).

By default, the slice's rank is the original volume's rank minus 1.

pub fn from_reader_rank(
    source: R,
    header: &NiftiHeader,
    slice_rank: u16
) -> Result<Self>

Read a NIFTI volume from a stream of data. The header and expected byte order of the volume's data must be known in advance. It it also expected that the following bytes represent the first voxels of the volume (and not part of the extensions).

The slice rank defines how many dimensions each slice should have.

pub fn dim(&self) -> &[u16]

Retrieve the full volume shape.

pub fn slice_dim(&self) -> &[u16]

Retrieve the shape of the slices.

pub fn slices_read(&self) -> usize

Retrieve the number of slices already read

pub fn slices_left(&self) -> usize

Retrieve the number of slices left

pub fn read_slice(&mut self) -> Result<InMemNiftiVolume>

Read a volume slice from the data source, producing an in-memory sub-volume.

pub fn read_slice_inline(&mut self, buffer: Vec<u8>) -> Result<InMemNiftiVolume>

Read a volume slice from the data source, producing an in-memory sub-volume. This method reuses the given buffer to avoid reallocations. Any data that the buffer previously had is discarded.

pub fn next_inline(
    &mut self,
    buffer: Vec<u8>
) -> Option<Result<InMemNiftiVolume>>

Fetch the next slice while reusing a raw data buffer. This is the streaming iterator equivalent of Iterator::next. Once the output volume has been used, the method into_raw_data can be used to recover the vector for the subsequent iteration.

pub fn indexed<'a>(
    &'a mut self
) -> impl Iterator<Item = Result<(Idx, InMemNiftiVolume)>> + 'a

Adapt the streamed volume to produce slice indices alongside the produced slices.

Example

let mut volume = get_volume();
for slice_pair in volume.indexed() {
    let (idx, slice): (Idx, InMemNiftiVolume) = slice_pair?;
    // use idx and slice
}

Trait Implementations

impl<R: Debug> Debug for StreamedNiftiVolume<R>

pub fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<R> FromSource<R> for StreamedNiftiVolume<R> where
    R: Read, 

pub fn from_reader(
    reader: R,
    header: &NiftiHeader,
    options: Self::Options
) -> Result<Self>

Read a NIfTI volume from a stream of raw voxel data. The header and expected byte order of the volume's data must be known in advance. It is also expected that the following bytes represent the first voxels of the volume (and not part of the extensions).

impl<R> FromSourceOptions for StreamedNiftiVolume<R>

type Options = Option<u16>

Set of additional options required (or useful) for constructing a volume.

impl<R> Iterator for StreamedNiftiVolume<R> where
    R: Read, 

The iterator pattern in a streamed NIfTI volume calls the method read_slice on next unless all slices have already been read from the volume.

type Item = Result<InMemNiftiVolume>

The type of the elements being iterated over.

pub fn next(&mut self) -> Option<Self::Item>

Advances the iterator and returns the next value.

pub fn size_hint(&self) -> (usize, Option<usize>)

Returns the bounds on the remaining length of the iterator.

pub fn count(self) -> usize

Consumes the iterator, counting the number of iterations and returning it.

pub fn last(self) -> Option<Self::Item>

Consumes the iterator, returning the last element.

pub fn advance_by(&mut self, n: usize) -> Result<(), usize>

🔬 This is a nightly-only experimental API. (iter_advance_by)

recently added

Advances the iterator by n elements.

pub fn nth(&mut self, n: usize) -> Option<Self::Item>

Returns the nth element of the iterator.

pub fn step_by(self, step: usize) -> StepBy<Self>

Creates an iterator starting at the same point, but stepping by the given amount at each iteration.

pub fn chain<U>(self, other: U) -> Chain<Self, <U as IntoIterator>::IntoIter> where
    U: IntoIterator<Item = Self::Item>, 

Takes two iterators and creates a new iterator over both in sequence.

pub fn zip<U>(self, other: U) -> Zip<Self, <U as IntoIterator>::IntoIter> where
    U: IntoIterator, 

'Zips up' two iterators into a single iterator of pairs.

pub fn intersperse(self, separator: Self::Item) -> Intersperse<Self> where
    Self::Item: Clone, 

🔬 This is a nightly-only experimental API. (iter_intersperse)

recently added

Places a copy of separator between all elements.

pub fn intersperse_with<G>(self, separator: G) -> IntersperseWith<Self, G> where
    G: FnMut() -> Self::Item, 

🔬 This is a nightly-only experimental API. (iter_intersperse)

recently added

Places an element generated by separator between all elements.

pub fn map<B, F>(self, f: F) -> Map<Self, F> where
    F: FnMut(Self::Item) -> B, 

Takes a closure and creates an iterator which calls that closure on each element.

pub fn for_each<F>(self, f: F) where
    F: FnMut(Self::Item), 

Calls a closure on each element of an iterator.

pub fn filter<P>(self, predicate: P) -> Filter<Self, P> where
    P: FnMut(&Self::Item) -> bool, 

Creates an iterator which uses a closure to determine if an element should be yielded.

pub fn filter_map<B, F>(self, f: F) -> FilterMap<Self, F> where
    F: FnMut(Self::Item) -> Option<B>, 

Creates an iterator that both filters and maps.

pub fn enumerate(self) -> Enumerate<Self>

Creates an iterator which gives the current iteration count as well as the next value.

pub fn peekable(self) -> Peekable<Self>

Creates an iterator which can use peek to look at the next element of the iterator without consuming it.

pub fn skip_while<P>(self, predicate: P) -> SkipWhile<Self, P> where
    P: FnMut(&Self::Item) -> bool, 

Creates an iterator that skips elements based on a predicate.

pub fn take_while<P>(self, predicate: P) -> TakeWhile<Self, P> where
    P: FnMut(&Self::Item) -> bool, 

Creates an iterator that yields elements based on a predicate.

pub fn map_while<B, P>(self, predicate: P) -> MapWhile<Self, P> where
    P: FnMut(Self::Item) -> Option<B>, 

🔬 This is a nightly-only experimental API. (iter_map_while)

recently added

Creates an iterator that both yields elements based on a predicate and maps.

pub fn skip(self, n: usize) -> Skip<Self>

Creates an iterator that skips the first n elements.

pub fn take(self, n: usize) -> Take<Self>

Creates an iterator that yields its first n elements.

pub fn scan<St, B, F>(self, initial_state: St, f: F) -> Scan<Self, St, F> where
    F: FnMut(&mut St, Self::Item) -> Option<B>, 

An iterator adaptor similar to fold that holds internal state and produces a new iterator.

pub fn flat_map<U, F>(self, f: F) -> FlatMap<Self, U, F> where
    U: IntoIterator,
    F: FnMut(Self::Item) -> U, 

Creates an iterator that works like map, but flattens nested structure.

pub fn flatten(self) -> Flatten<Self> where
    Self::Item: IntoIterator, 

Creates an iterator that flattens nested structure.

pub fn fuse(self) -> Fuse<Self>

Creates an iterator which ends after the first None.

pub fn inspect<F>(self, f: F) -> Inspect<Self, F> where
    F: FnMut(&Self::Item), 

Does something with each element of an iterator, passing the value on.

pub fn by_ref(&mut self) -> &mut Self

Borrows an iterator, rather than consuming it.

#[must_use = "if you really need to exhaust the iterator, consider `.for_each(drop)` instead"]pub fn collect<B>(self) -> B where
    B: FromIterator<Self::Item>, 

Transforms an iterator into a collection.

pub fn partition<B, F>(self, f: F) -> (B, B) where
    B: Default + Extend<Self::Item>,
    F: FnMut(&Self::Item) -> bool, 

Consumes an iterator, creating two collections from it.

pub fn partition_in_place<'a, T, P>(self, predicate: P) -> usize where
    Self: DoubleEndedIterator<Item = &'a mut T>,
    T: 'a,
    P: FnMut(&T) -> bool, 

🔬 This is a nightly-only experimental API. (iter_partition_in_place)

new API

Reorders the elements of this iterator in-place according to the given predicate, such that all those that return true precede all those that return false. Returns the number of true elements found.

pub fn is_partitioned<P>(self, predicate: P) -> bool where
    P: FnMut(Self::Item) -> bool, 

🔬 This is a nightly-only experimental API. (iter_is_partitioned)

new API

Checks if the elements of this iterator are partitioned according to the given predicate, such that all those that return true precede all those that return false.

pub fn try_fold<B, F, R>(&mut self, init: B, f: F) -> R where
    R: Try<Ok = B>,
    F: FnMut(B, Self::Item) -> R, 

An iterator method that applies a function as long as it returns successfully, producing a single, final value.

pub fn try_for_each<F, R>(&mut self, f: F) -> R where
    R: Try<Ok = ()>,
    F: FnMut(Self::Item) -> R, 

An iterator method that applies a fallible function to each item in the iterator, stopping at the first error and returning that error.

pub fn fold<B, F>(self, init: B, f: F) -> B where
    F: FnMut(B, Self::Item) -> B, 

An iterator method that applies a function, producing a single, final value.

pub fn fold_first<F>(self, f: F) -> Option<Self::Item> where
    F: FnMut(Self::Item, Self::Item) -> Self::Item, 

🔬 This is a nightly-only experimental API. (iterator_fold_self)

The same as fold(), but uses the first element in the iterator as the initial value, folding every subsequent element into it. If the iterator is empty, return None; otherwise, return the result of the fold.

pub fn all<F>(&mut self, f: F) -> bool where
    F: FnMut(Self::Item) -> bool, 

Tests if every element of the iterator matches a predicate.

pub fn any<F>(&mut self, f: F) -> bool where
    F: FnMut(Self::Item) -> bool, 

Tests if any element of the iterator matches a predicate.

pub fn find<P>(&mut self, predicate: P) -> Option<Self::Item> where
    P: FnMut(&Self::Item) -> bool, 

Searches for an element of an iterator that satisfies a predicate.

pub fn find_map<B, F>(&mut self, f: F) -> Option<B> where
    F: FnMut(Self::Item) -> Option<B>, 

Applies function to the elements of iterator and returns the first non-none result.

pub fn try_find<F, R>(
    &mut self,
    f: F
) -> Result<Option<Self::Item>, <R as Try>::Error> where
    R: Try<Ok = bool>,
    F: FnMut(&Self::Item) -> R, 

🔬 This is a nightly-only experimental API. (try_find)

new API

Applies function to the elements of iterator and returns the first true result or the first error.

pub fn position<P>(&mut self, predicate: P) -> Option<usize> where
    P: FnMut(Self::Item) -> bool, 

Searches for an element in an iterator, returning its index.

pub fn rposition<P>(&mut self, predicate: P) -> Option<usize> where
    Self: ExactSizeIterator + DoubleEndedIterator,
    P: FnMut(Self::Item) -> bool, 

Searches for an element in an iterator from the right, returning its index.

pub fn max(self) -> Option<Self::Item> where
    Self::Item: Ord, 

Returns the maximum element of an iterator.

pub fn min(self) -> Option<Self::Item> where
    Self::Item: Ord, 

Returns the minimum element of an iterator.

pub fn max_by_key<B, F>(self, f: F) -> Option<Self::Item> where
    B: Ord,
    F: FnMut(&Self::Item) -> B, 

Returns the element that gives the maximum value from the specified function.

pub fn max_by<F>(self, compare: F) -> Option<Self::Item> where
    F: FnMut(&Self::Item, &Self::Item) -> Ordering, 

Returns the element that gives the maximum value with respect to the specified comparison function.

pub fn min_by_key<B, F>(self, f: F) -> Option<Self::Item> where
    B: Ord,
    F: FnMut(&Self::Item) -> B, 

Returns the element that gives the minimum value from the specified function.

pub fn min_by<F>(self, compare: F) -> Option<Self::Item> where
    F: FnMut(&Self::Item, &Self::Item) -> Ordering, 

Returns the element that gives the minimum value with respect to the specified comparison function.

pub fn rev(self) -> Rev<Self> where
    Self: DoubleEndedIterator, 

Reverses an iterator's direction.

pub fn unzip<A, B, FromA, FromB>(self) -> (FromA, FromB) where
    Self: Iterator<Item = (A, B)>,
    FromA: Default + Extend<A>,
    FromB: Default + Extend<B>, 

Converts an iterator of pairs into a pair of containers.

pub fn copied<'a, T>(self) -> Copied<Self> where
    Self: Iterator<Item = &'a T>,
    T: 'a + Copy, 

Creates an iterator which copies all of its elements.

pub fn cloned<'a, T>(self) -> Cloned<Self> where
    Self: Iterator<Item = &'a T>,
    T: 'a + Clone, 

Creates an iterator which clones all of its elements.

pub fn cycle(self) -> Cycle<Self> where
    Self: Clone, 

Repeats an iterator endlessly.

pub fn sum<S>(self) -> S where
    S: Sum<Self::Item>, 

Sums the elements of an iterator.

pub fn product<P>(self) -> P where
    P: Product<Self::Item>, 

Iterates over the entire iterator, multiplying all the elements

pub fn cmp<I>(self, other: I) -> Ordering where
    I: IntoIterator<Item = Self::Item>,
    Self::Item: Ord, 

Lexicographically compares the elements of this Iterator with those of another.

pub fn cmp_by<I, F>(self, other: I, cmp: F) -> Ordering where
    F: FnMut(Self::Item, <I as IntoIterator>::Item) -> Ordering,
    I: IntoIterator, 

🔬 This is a nightly-only experimental API. (iter_order_by)

Lexicographically compares the elements of this Iterator with those of another with respect to the specified comparison function.

pub fn partial_cmp<I>(self, other: I) -> Option<Ordering> where
    I: IntoIterator,
    Self::Item: PartialOrd<<I as IntoIterator>::Item>, 

Lexicographically compares the elements of this Iterator with those of another.

pub fn partial_cmp_by<I, F>(self, other: I, partial_cmp: F) -> Option<Ordering> where
    F: FnMut(Self::Item, <I as IntoIterator>::Item) -> Option<Ordering>,
    I: IntoIterator, 

🔬 This is a nightly-only experimental API. (iter_order_by)

Lexicographically compares the elements of this Iterator with those of another with respect to the specified comparison function.

pub fn eq<I>(self, other: I) -> bool where
    I: IntoIterator,
    Self::Item: PartialEq<<I as IntoIterator>::Item>, 

Determines if the elements of this Iterator are equal to those of another.

pub fn eq_by<I, F>(self, other: I, eq: F) -> bool where
    F: FnMut(Self::Item, <I as IntoIterator>::Item) -> bool,
    I: IntoIterator, 

🔬 This is a nightly-only experimental API. (iter_order_by)

Determines if the elements of this Iterator are equal to those of another with respect to the specified equality function.

pub fn ne<I>(self, other: I) -> bool where
    I: IntoIterator,
    Self::Item: PartialEq<<I as IntoIterator>::Item>, 

Determines if the elements of this Iterator are unequal to those of another.

pub fn lt<I>(self, other: I) -> bool where
    I: IntoIterator,
    Self::Item: PartialOrd<<I as IntoIterator>::Item>, 

Determines if the elements of this Iterator are lexicographically less than those of another.

pub fn le<I>(self, other: I) -> bool where
    I: IntoIterator,
    Self::Item: PartialOrd<<I as IntoIterator>::Item>, 

Determines if the elements of this Iterator are lexicographically less or equal to those of another.

pub fn gt<I>(self, other: I) -> bool where
    I: IntoIterator,
    Self::Item: PartialOrd<<I as IntoIterator>::Item>, 

Determines if the elements of this Iterator are lexicographically greater than those of another.

pub fn ge<I>(self, other: I) -> bool where
    I: IntoIterator,
    Self::Item: PartialOrd<<I as IntoIterator>::Item>, 

Determines if the elements of this Iterator are lexicographically greater than or equal to those of another.

pub fn is_sorted(self) -> bool where
    Self::Item: PartialOrd<Self::Item>, 

🔬 This is a nightly-only experimental API. (is_sorted)

new API

Checks if the elements of this iterator are sorted.

pub fn is_sorted_by<F>(self, compare: F) -> bool where
    F: FnMut(&Self::Item, &Self::Item) -> Option<Ordering>, 

🔬 This is a nightly-only experimental API. (is_sorted)

new API

Checks if the elements of this iterator are sorted using the given comparator function.

pub fn is_sorted_by_key<F, K>(self, f: F) -> bool where
    F: FnMut(Self::Item) -> K,
    K: PartialOrd<K>, 

🔬 This is a nightly-only experimental API. (is_sorted)

new API

Checks if the elements of this iterator are sorted using the given key extraction function.

impl<'a, R> NiftiVolume for &'a StreamedNiftiVolume<R>

pub fn dim(&self) -> &[u16]

Get the dimensions of the volume. Unlike how NIFTI-1 stores dimensions, the returned slice does not include dim[0] and is clipped to the effective number of dimensions.

pub fn dimensionality(&self) -> usize

Get the volume's number of dimensions. In a fully compliant file, this is equivalent to the corresponding header's dim[0] field (with byte swapping already applied).

pub fn data_type(&self) -> NiftiType

Get this volume's data type.

impl<R> NiftiVolume for StreamedNiftiVolume<R>

pub fn dim(&self) -> &[u16]

Get the dimensions of the volume. Unlike how NIFTI-1 stores dimensions, the returned slice does not include dim[0] and is clipped to the effective number of dimensions.

pub fn dimensionality(&self) -> usize

Get the volume's number of dimensions. In a fully compliant file, this is equivalent to the corresponding header's dim[0] field (with byte swapping already applied).

pub fn data_type(&self) -> NiftiType

Get this volume's data type.