Module needletail::kmer
[−]
[src]
This module contains functions for kmerizing a longer sequence and various utilities for dealing with these kmers.
Functions
canonical |
Taking in a sequence string, return the canonical form of the sequence (e.g. the lexigraphically lowest of either the original sequence or its reverse complement) |
complement |
Returns the complementary base for a given IUPAC base code. |
has_no_n |
Determines if a sequence has any non-primary four bases characters in it |
is_good_base | |
minimizer |
Find the lexigraphically smallest substring of |
normalize |
Transform a FASTX sequence into it's "normalized" form. |