ncbitaxonomy
This is a Rust crate (i.e. library) for working with a local copy of the
NCBI Taxonomy database.
The database can be downloaded (either taxdump.zip
or taxdump.tar.gz
) from the
NCBI Taxonomy FTP site.
Documentation for version 0.1.3 is available at crates.io.
taxonomy_filter_refseq
(new in 0.1.1)
A tool to filter a NCBI RefSeq FASTA file so that only the ancestors of a given taxon are retained.
<INPUT_FASTA> FASTA
<TAXONOMY_DIR> Directory
<ANCESTOR_NAME> Name
<OUTPUT_FASTA> Output )
TODO
- Refactor taxonomy_filter_refseq: move most code to library, add tests