Struct lt_fm_index::LtFmIndexConfig [−][src]
pub struct LtFmIndexConfig { /* fields omitted */ }
Expand description
Configuration to generate LtFmIndex safely.
LtFmIndexConfig can safely generate all implementation types in the crate::use_case module through limitations of setting values.
- Default Setting
- Text with no noise (NucleotideOnly, AminoacidOnly)
- Default kmer size
- NucleotideOnly: 10
- NucleotideWithNoise: 9
- AminoacidOnly: 5
- AminoacidWithNoise: 5
- Sampling ratio is 2
- Bwt interval is 64
Implementations
New Config for nucleotide
New Config for aminoacid
Text contains noise
Change kmer size for kmer count table
Kmer size allows the value not less than the length of the text and half the pointer width.
Change sampling ratio for suffix array
Sampling ratio allows the positive integer
Change bwt interval to 128 (default is 64)
Generate LtFmIndex
with Text