Struct light_phylogeny::Options

pub struct Options {

    pub gene_internal: bool,
    pub species_internal: bool,
    pub clado_flag: bool,
    pub species_only_flag: bool,
    pub real_length_flag: bool,
    pub open_browser: bool,
    pub verbose: bool,
    pub disp_gene: usize,
    pub scale: f32,
    pub ratio: f32,
    pub rotate: bool,
    pub remove: bool,
    pub thickness_flag: bool,
    pub thickness_thresh: usize,
    pub thickness_gene: usize,
    pub thickness_disp_score: bool,
    pub optimisation: bool,
    pub height: f32,
    pub width: f32,
    pub support: bool,
}

Structure Options: drawing options.

Fields

gene_internal: bool

display internal gene nodes

species_internal: bool

display internal species nodes (recPhyloXML)

clado_flag: bool

display a cladogramme

species_only_flag: bool

only draw the species tree (recPhyloXML)

real_length_flag: bool

use the real branch length

open_browser: bool

open the svg in the browser

verbose: bool

verbose mode

disp_gene: usize

only draw gene tree number # (recPhyloXML)

scale: f32

scale to be applied to real branch length

ratio: f32

ratio between species pipe tree width and cumulated gene trees width (recPhyloXML)

rotate: bool

rotate the svg 90 counter clockwise

remove: bool

not yet implemented

thickness_flag: bool

draw only one transfer to represent redundant transfers (recPhyloXML)

thickness_thresh: usize

abundance threshold for displaying redundant transfers (recPhyloXML)

thickness_gene: usize

number of the gene tree to display when displaying redundant transfers as one (recPhyloXML)

thickness_disp_score: bool

display the abundance of the redundant transfers (recPhyloXML)

optimisation: bool

optimise species branches left/right orientation in order to minimise transfer crossings (recPhyloXML, under development)

height: f32

scale to be applied to the heigth of the tree

width: f32

width to be applied to the heigth of the tree

support: bool

display support

Implementations

impl Options

pub fn new() -> Self

Trait Implementations

impl Debug for Options

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.