Struct light_phylogeny::Noeud

pub struct Noeud<T> where
    T: PartialEq,  {

    pub idx: usize,
    pub name: String,
    pub support: String,
    pub parent: Option<usize>,
    pub children: Vec<usize>,
    pub x: f32,
    pub xmod: f32,
    pub y: f32,
    pub ymod: f32,
    pub l: f32,
    pub e: Event,
    pub location: String,
    pub width: f32,
    pub height: f32,
    pub nbg: usize,
    pub nodes: Vec<(usize, usize)>,
    pub is_a_transfert: bool,
    pub go_left: usize,
    pub go_right: usize,
    pub fixed: bool,
    pub transfers: Vec<usize>,
    pub visible: bool,
    // some fields omitted
}

Structure Noeud.

Fields

idx: usize

index in the Arena structure

name: String

name of the node

support: String

support of the node

parent: Option<usize>

parent if the node

children: Vec<usize>

children of the node

x: f32

x coordinate

xmod: f32

x shift

y: f32

y coordinate

ymod: f32

y shift

l: f32

real branch length

e: Event

event (duplication, speciation, loss, transfer …)

location: String

location of the gene tree node in the species tree (recPhyloXML)

width: f32

pipe width (recPhyloXML)

height: f32

pipe height (recPhyloXML)

nbg: usize

number of gene nodes associated to the species node (recPhyloXML)

nodes: Vec<(usize, usize)>

number of gene nodes associated to the species node (recPhyloXML)

is_a_transfert: bool

the node come from a transfer (it is a transferBack and its parent is a BranchingOut)

go_left: usize

optimisation: number of left-side orientation minimising transfer crossings (recPhyloXML)

go_right: usize

optimisation: number of right-side orientation minimising transfer crossings (recPhyloXML)

fixed: bool

optimisation: node is fixed, left/side orientation of children can not be modified (recPhyloXML)

transfers: Vec<usize>

optimisation: indexes of transfers associated to the node (recPhyloXML)

visible: bool

will be displayed

Implementations

impl<T> Noeud<T> where
    T: PartialEq, 

pub fn new(idx: usize, val: T) -> Self

pub fn set_event(&mut self, e: Event)

Set node event

pub fn set_x_noref(&mut self, x: f32)

Set node x

pub fn set_xmod_noref(&mut self, xmod: f32)

Set node xmod

pub fn set_ymod_noref(&mut self, ymod: f32)

Set node ymod

pub fn set_y_noref(&mut self, y: f32)

Set node y

Trait Implementations

impl<T: Debug> Debug for Noeud<T> where
    T: PartialEq, 

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.