Struct light_phylogeny::Noeud[−][src]

pub struct Noeud<T> where
    T: PartialEq,  {
Show fields
    pub idx: usize,
    pub name: String,
    pub support: String,
    pub parent: Option<usize>,
    pub children: Vec<usize>,
    pub x: f32,
    pub xmod: f32,
    pub y: f32,
    pub ymod: f32,
    pub l: f32,
    pub e: Event,
    pub location: String,
    pub width: f32,
    pub height: f32,
    pub nbg: usize,
    pub nodes: Vec<(usize, usize)>,
    pub is_a_transfert: bool,
    pub go_left: usize,
    pub go_right: usize,
    pub fixed: bool,
    pub transfers: Vec<usize>,
    // some fields omitted

}

Structure Noeud.

Fields

idx: usize

index in the Arena structure

name: String

name of the node

support: String

support of the node

parent: Option<usize>

parent if the node

children: Vec<usize>

children of the node

x: f32

x coordinate

xmod: f32

x shift

y: f32

y coordinate

ymod: f32

y shift

l: f32

real branch length

e: Event

event (duplication, speciation, loss, transfer …)

location: String

location of the gene tree node in the species tree (recPhyloXML)

width: f32

pipe width (recPhyloXML)

height: f32

pipe height (recPhyloXML)

nbg: usize

number of gene nodes associated to the species node (recPhyloXML)

nodes: Vec<(usize, usize)>

number of gene nodes associated to the species node (recPhyloXML)

is_a_transfert: bool

the node come from a transfer (it is a transferBack and its parent is a BranchingOut)

go_left: usize

optimisation: number of left-side orientation minimising transfer crossings (recPhyloXML)

go_right: usize

optimisation: number of right-side orientation minimising transfer crossings (recPhyloXML)

fixed: bool

optimisation: node is fixed, left/side orientation of children can not be modified (recPhyloXML)

transfers: Vec<usize>

optimisation: indexes of transfers associated to the node (recPhyloXML)

Implementations

impl<T> Noeud<T> where
    T: PartialEq, [src]

pub fn new(idx: usize, val: T) -> Self[src]

pub fn set_event(&mut self, e: Event)[src]

Set node event

pub fn set_x_noref(&mut self, x: f32)[src]

Set node x

pub fn set_xmod_noref(&mut self, xmod: f32)[src]

Set node xmod

pub fn set_ymod_noref(&mut self, ymod: f32)[src]

Set node ymod

pub fn set_y_noref(&mut self, y: f32)[src]

Set node y

Trait Implementations

impl<T: Debug> Debug for Noeud<T> where
    T: PartialEq, [src]

fn fmt(&self, f: &mut Formatter<'_>) -> Result[src]

Formats the value using the given formatter. Read more

Auto Trait Implementations

impl<T> RefUnwindSafe for Noeud<T> where
    T: RefUnwindSafe, 

impl<T> Send for Noeud<T> where
    T: Send, 

impl<T> Sync for Noeud<T> where
    T: Sync, 

impl<T> Unpin for Noeud<T> where
    T: Unpin, 

impl<T> UnwindSafe for Noeud<T> where
    T: UnwindSafe, 

Blanket Implementations

impl<T> Any for T where
    T: 'static + ?Sized, [src]

pub fn type_id(&self) -> TypeId[src]

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T where
    T: ?Sized, [src]

pub fn borrow(&self) -> &T[src]

Immutably borrows from an owned value. Read more

impl<T> BorrowMut<T> for T where
    T: ?Sized, [src]

pub fn borrow_mut(&mut self) -> &mut T[src]

Mutably borrows from an owned value. Read more

impl<T> From<T> for T[src]

pub fn from(t: T) -> T[src]

Performs the conversion.

impl<T, U> Into<U> for T where
    U: From<T>, [src]

pub fn into(self) -> U[src]

Performs the conversion.

impl<T, U> TryFrom<U> for T where
    U: Into<T>, [src]

type Error = Infallible

The type returned in the event of a conversion error.

pub fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>[src]

Performs the conversion.

impl<T, U> TryInto<U> for T where
    U: TryFrom<T>, [src]

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

pub fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>[src]

Performs the conversion.

impl<V, T> VZip<V> for T where
    V: MultiLane<T>, 

pub fn vzip(self) -> V