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# rustc version
rustc 1.89.0-nightly (5526a2f47 2025-06-20)# docs.rs version
docsrs 0.6.0 (0a8149e8 2025-06-15)# build log
[INFO] running `Command { std: "docker" "create" "-v" "/home/cratesfyi/workspace-builder/builds/libprosic-0.7.3/target:/opt/rustwide/target:rw,Z" "-v" "/home/cratesfyi/workspace-builder/builds/libprosic-0.7.3/source:/opt/rustwide/workdir:ro,Z" "-v" "/home/cratesfyi/workspace-builder/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/home/cratesfyi/workspace-builder/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "6442450944" "--cpus" "6" "--user" "1001:1001" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--emit=invocation-specific\", \"--resource-suffix\", \"-20250620-1.89.0-nightly-5526a2f47\", \"--static-root-path\", \"/-/rustdoc.static/\", \"--cap-lints\", \"warn\", \"--extern-html-root-takes-precedence\"]" "--offline" "-Zunstable-options" "--config=doc.extern-map.registries.crates-io=\"https://docs.rs/{pkg_name}/{version}/x86_64-unknown-linux-gnu\"" "-Zrustdoc-scrape-examples" "-j6" "--target" "x86_64-unknown-linux-gnu", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] dea7405491a88d939126eb5d793a82378e62a05282deaa1509bbb1f325d5de24
[INFO] running `Command { std: "docker" "start" "-a" "dea7405491a88d939126eb5d793a82378e62a05282deaa1509bbb1f325d5de24", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr] warning: target filter specified, but no targets matched; this is a no-op
[INFO] [stderr] Checking rust-htslib v0.22.0
[INFO] [stderr] error: expected one of `!`, `(`, `+`, `::`, or `<`, found `/`
[INFO] [stderr] --> /opt/rustwide/target/x86_64-unknown-linux-gnu/debug/build/rust-htslib-d0696f9b366981ba/out/bindings.rs:85:31536
[INFO] [stderr] |
[INFO] [stderr] 85 | ...ruct htsFormat { pub category : htsFormatCategory , pub format : htsExactFormat , pub version : htsFormat_struct_(unnamed_at__/htslib/...
[INFO] [stderr] | --------- while parsing this struct ^ expected one of `!`, `(`, `+`, `::`, or `<`
[INFO] [stderr]
[INFO] [stderr] error: expected one of `!`, `(`, `)`, `+`, `,`, `::`, or `<`, found `/`
[INFO] [stderr] --> /opt/rustwide/target/x86_64-unknown-linux-gnu/debug/build/rust-htslib-d0696f9b366981ba/out/bindings.rs:85:31809
[INFO] [stderr] |
[INFO] [stderr] 85 | ...one ) ] pub struct htsFormat_struct_(unnamed_at__/htslib/htslib/hts_h_154_5) { pub major : :: std :: os :: raw :: c_short , pub minor ...
[INFO] [stderr] | ^ expected one of 7 possible tokens
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:17:29
[INFO] [stderr] |
[INFO] [stderr] 17 | slice::Iter<'a, htslib::bam_pileup1_t>,
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:18:20
[INFO] [stderr] |
[INFO] [stderr] 18 | fn(&'a htslib::bam_pileup1_t) -> Alignment<'a>,
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:24:27
[INFO] [stderr] |
[INFO] [stderr] 24 | inner: *const htslib::bam_pileup1_t,
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:47:34
[INFO] [stderr] |
[INFO] [stderr] 47 | fn inner(&self) -> &[htslib::bam_pileup1_t] {
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:50:44
[INFO] [stderr] |
[INFO] [stderr] 50 | self.inner as *mut htslib::bam_pileup1_t,
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:59:24
[INFO] [stderr] |
[INFO] [stderr] 59 | inner: &'a htslib::bam_pileup1_t,
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_pileup1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:69:35
[INFO] [stderr] |
[INFO] [stderr] 69 | pub fn new(inner: &'a htslib::bam_pileup1_t) -> Self {
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_plp_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:130:18
[INFO] [stderr] |
[INFO] [stderr] 130 | itr: htslib::bam_plp_t,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_plp_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:134:48
[INFO] [stderr] |
[INFO] [stderr] 134 | pub fn new(reader: &'a mut R, itr: htslib::bam_plp_t) -> Self {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_plp_set_maxcnt` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:143:21
[INFO] [stderr] |
[INFO] [stderr] 143 | htslib::bam_plp_set_maxcnt(self.itr, depth as i32);
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_plp_auto` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:153:38
[INFO] [stderr] |
[INFO] [stderr] 153 | let inner = unsafe { htslib::bam_plp_auto(self.itr, &mut tid, &mut pos, &mut depth) };
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_plp_reset` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:171:21
[INFO] [stderr] |
[INFO] [stderr] 171 | htslib::bam_plp_reset(self.itr);
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_plp_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/pileup.rs:172:21
[INFO] [stderr] |
[INFO] [stderr] 172 | htslib::bam_plp_destroy(self.itr);
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:57:29
[INFO] [stderr] |
[INFO] [stderr] 57 | pub inner: *mut htslib::bam1_t,
[INFO] [stderr] | ^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_copy1` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:68:26
[INFO] [stderr] |
[INFO] [stderr] 68 | unsafe { htslib::bam_copy1(copy.inner, self.inner) };
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_init1` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:102:38
[INFO] [stderr] |
[INFO] [stderr] 102 | let inner = unsafe { htslib::bam_init1() };
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:112:43
[INFO] [stderr] |
[INFO] [stderr] 112 | pub fn from_inner(inner: *mut htslib::bam1_t) -> Self {
[INFO] [stderr] | ^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `sam_parse1` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:135:21
[INFO] [stderr] |
[INFO] [stderr] 135 | htslib::sam_parse1(&mut sam_string, header_view.inner_ptr_mut(), record.inner)
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:150:49
[INFO] [stderr] |
[INFO] [stderr] 150 | pub fn inner_mut(&mut self) -> &mut htslib::bam1_t {
[INFO] [stderr] | ^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:155:37
[INFO] [stderr] |
[INFO] [stderr] 155 | pub fn inner(&self) -> &htslib::bam1_t {
[INFO] [stderr] | ^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_aux_get` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:468:21
[INFO] [stderr] |
[INFO] [stderr] 468 | htslib::bam_aux_get(
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_aux2i` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:480:47
[INFO] [stderr] |
[INFO] [stderr] 480 | Some(Aux::Integer(htslib::bam_aux2i(aux) as i64))
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_aux2f` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:482:56
[INFO] [stderr] |
[INFO] [stderr] 482 | b'f' | b'd' => Some(Aux::Float(htslib::bam_aux2f(aux))),
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_aux2A` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:483:48
[INFO] [stderr] |
[INFO] [stderr] 483 | b'A' => Some(Aux::Char(htslib::bam_aux2A(aux) as u8)),
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:500:44
[INFO] [stderr] |
[INFO] [stderr] 500 | Aux::Integer(v) => htslib::bam_aux_append(
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:507:42
[INFO] [stderr] |
[INFO] [stderr] 507 | Aux::Float(v) => htslib::bam_aux_append(
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:514:41
[INFO] [stderr] |
[INFO] [stderr] 514 | Aux::Char(v) => htslib::bam_aux_append(
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_aux_append` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:521:43
[INFO] [stderr] |
[INFO] [stderr] 521 | Aux::String(v) => htslib::bam_aux_append(
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_aux_get` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:541:21
[INFO] [stderr] |
[INFO] [stderr] 541 | htslib::bam_aux_get(
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_aux_del` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:550:25
[INFO] [stderr] |
[INFO] [stderr] 550 | htslib::bam_aux_del(self.inner, aux);
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_destroy1` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/record.rs:598:30
[INFO] [stderr] |
[INFO] [stderr] 598 | unsafe { htslib::bam_destroy1(self.inner) };
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:30:39
[INFO] [stderr] |
[INFO] [stderr] 30 | pub fn set_threads(bgzf: *mut htslib::BGZF, n_threads: usize) -> Result<(), ThreadingError> {
[INFO] [stderr] | ^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bgzf_mt` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:33:25
[INFO] [stderr] |
[INFO] [stderr] 33 | if unsafe { htslib::bgzf_mt(bgzf, n_threads as i32, 256) } != 0 {
[INFO] [stderr] | ^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:61:36
[INFO] [stderr] |
[INFO] [stderr] 61 | fn bgzf(&self) -> *mut htslib::BGZF;
[INFO] [stderr] | ^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bgzf_seek` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:68:36
[INFO] [stderr] |
[INFO] [stderr] 68 | let ret = unsafe { htslib::bgzf_seek(self.bgzf(), offset, libc::SEEK_SET) };
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:100:24
[INFO] [stderr] |
[INFO] [stderr] 100 | bgzf: *mut htslib::BGZF,
[INFO] [stderr] | ^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_hdr_read` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:136:39
[INFO] [stderr] |
[INFO] [stderr] 136 | let header = unsafe { htslib::bam_hdr_read(bgzf) };
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:145:30
[INFO] [stderr] |
[INFO] [stderr] 145 | record: *mut htslib::bam1_t,
[INFO] [stderr] | ^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_read1` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:148:26
[INFO] [stderr] |
[INFO] [stderr] 148 | unsafe { htslib::bam_read1(_self.bgzf, record) }
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_read1` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:174:32
[INFO] [stderr] |
[INFO] [stderr] 174 | match unsafe { htslib::bam_read1(self.bgzf, record.inner) } {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_plp_init` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:193:21
[INFO] [stderr] |
[INFO] [stderr] 193 | htslib::bam_plp_init(
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:201:36
[INFO] [stderr] |
[INFO] [stderr] 201 | fn bgzf(&self) -> *mut htslib::BGZF {
[INFO] [stderr] | ^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bgzf_close` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:213:21
[INFO] [stderr] |
[INFO] [stderr] 213 | htslib::bgzf_close(self.bgzf);
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:220:24
[INFO] [stderr] |
[INFO] [stderr] 220 | bgzf: *mut htslib::BGZF,
[INFO] [stderr] | ^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `hts_idx_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:222:23
[INFO] [stderr] |
[INFO] [stderr] 222 | idx: *mut htslib::hts_idx_t,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `hts_itr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:223:30
[INFO] [stderr] |
[INFO] [stderr] 223 | itr: Option<*mut htslib::hts_itr_t>,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_hdr_read` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:254:39
[INFO] [stderr] |
[INFO] [stderr] 254 | let header = unsafe { htslib::bam_hdr_read(bgzf) };
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_idx_load` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:255:36
[INFO] [stderr] |
[INFO] [stderr] 255 | let idx = unsafe { htslib::hts_idx_load(path.as_ptr(), htslib::HTS_FMT_BAI as i32) };
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_itr_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:270:30
[INFO] [stderr] |
[INFO] [stderr] 270 | unsafe { htslib::hts_itr_destroy(itr) }
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `sam_itr_queryi` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:272:36
[INFO] [stderr] |
[INFO] [stderr] 272 | let itr = unsafe { htslib::sam_itr_queryi(self.idx, tid as i32, beg as i32, end as i32) };
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:284:30
[INFO] [stderr] |
[INFO] [stderr] 284 | record: *mut htslib::bam1_t,
[INFO] [stderr] | ^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_read1` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:289:38
[INFO] [stderr] |
[INFO] [stderr] 289 | None => unsafe { htslib::bam_read1(_self.bgzf, record) }, // ordinary reading
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_plp_init` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:318:21
[INFO] [stderr] |
[INFO] [stderr] 318 | htslib::bam_plp_init(
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:326:36
[INFO] [stderr] |
[INFO] [stderr] 326 | fn bgzf(&self) -> *mut htslib::BGZF {
[INFO] [stderr] | ^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_itr_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:339:25
[INFO] [stderr] |
[INFO] [stderr] 339 | htslib::hts_itr_destroy(self.itr.unwrap());
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_idx_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:341:21
[INFO] [stderr] |
[INFO] [stderr] 341 | htslib::hts_idx_destroy(self.idx);
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bgzf_close` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:342:21
[INFO] [stderr] |
[INFO] [stderr] 342 | htslib::bgzf_close(self.bgzf);
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:350:21
[INFO] [stderr] |
[INFO] [stderr] 350 | f: *mut htslib::BGZF,
[INFO] [stderr] | ^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `sam_hdr_parse` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:411:31
[INFO] [stderr] |
[INFO] [stderr] 411 | let rec = htslib::sam_hdr_parse((l_text + 1) as i32, text as *const i8);
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_hdr_write` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:419:21
[INFO] [stderr] |
[INFO] [stderr] 419 | htslib::bam_hdr_write(f, header_record);
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_write1` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:444:29
[INFO] [stderr] |
[INFO] [stderr] 444 | if unsafe { htslib::bam_write1(self.f, record.inner) } == -1 {
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bgzf_close` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:460:21
[INFO] [stderr] |
[INFO] [stderr] 460 | htslib::bgzf_close(self.f);
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:635:68
[INFO] [stderr] |
[INFO] [stderr] 635 | fn bgzf_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::BGZF, BGZFError> {
[INFO] [stderr] | ^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bgzf_open` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:637:26
[INFO] [stderr] |
[INFO] [stderr] 637 | unsafe { htslib::bgzf_open(path.as_ptr(), ffi::CString::new(mode).unwrap().as_ptr()) };
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `BGZF` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:647:24
[INFO] [stderr] |
[INFO] [stderr] 647 | bgzf: *mut htslib::BGZF,
[INFO] [stderr] | ^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `hts_itr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:648:23
[INFO] [stderr] |
[INFO] [stderr] 648 | itr: *mut htslib::hts_itr_t,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:649:26
[INFO] [stderr] |
[INFO] [stderr] 649 | record: *mut htslib::bam1_t,
[INFO] [stderr] | ^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_itr_next` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:652:17
[INFO] [stderr] |
[INFO] [stderr] 652 | htslib::hts_itr_next(
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:663:25
[INFO] [stderr] |
[INFO] [stderr] 663 | inner: *mut htslib::bam_hdr_t,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `sam_hdr_parse` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:689:31
[INFO] [stderr] |
[INFO] [stderr] 689 | let rec = htslib::sam_hdr_parse((l_text + 1) as i32, text as *const i8);
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:699:36
[INFO] [stderr] |
[INFO] [stderr] 699 | pub fn new(inner: *mut htslib::bam_hdr_t) -> Self {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:707:36
[INFO] [stderr] |
[INFO] [stderr] 707 | pub fn inner(&self) -> htslib::bam_hdr_t {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:713:47
[INFO] [stderr] |
[INFO] [stderr] 713 | pub fn inner_ptr(&self) -> *const htslib::bam_hdr_t {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bam_hdr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:719:49
[INFO] [stderr] |
[INFO] [stderr] 719 | pub fn inner_ptr_mut(&self) -> *mut htslib::bam_hdr_t {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_name2id` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:725:21
[INFO] [stderr] |
[INFO] [stderr] 725 | htslib::bam_name2id(
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_hdr_dup` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:774:37
[INFO] [stderr] |
[INFO] [stderr] 774 | inner: unsafe { htslib::bam_hdr_dup(self.inner) },
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bam_hdr_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bam/mod.rs:784:25
[INFO] [stderr] |
[INFO] [stderr] 784 | htslib::bam_hdr_destroy(self.inner);
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:35:29
[INFO] [stderr] |
[INFO] [stderr] 35 | pub inner: *mut htslib::bcf_hdr_t,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_init` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:43:37
[INFO] [stderr] |
[INFO] [stderr] 43 | inner: unsafe { htslib::bcf_hdr_init(ffi::CString::new(&b"w"[..]).unwrap().as_ptr()) },
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:57:37
[INFO] [stderr] |
[INFO] [stderr] 57 | inner: unsafe { htslib::bcf_hdr_dup(header.inner) },
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_subset` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:80:21
[INFO] [stderr] |
[INFO] [stderr] 80 | htslib::bcf_hdr_subset(
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_add_sample` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:104:21
[INFO] [stderr] |
[INFO] [stderr] 104 | htslib::bcf_hdr_add_sample(self.inner, ffi::CString::new(sample).unwrap().as_ptr())
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_append` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:121:26
[INFO] [stderr] |
[INFO] [stderr] 121 | unsafe { htslib::bcf_hdr_append(self.inner, ffi::CString::new(record).unwrap().as_ptr()) };
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_remove` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:184:21
[INFO] [stderr] |
[INFO] [stderr] 184 | htslib::bcf_hdr_remove(self.inner, type_ as i32, c_str.as_ptr());
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:192:26
[INFO] [stderr] |
[INFO] [stderr] 192 | unsafe { htslib::bcf_hdr_destroy(self.inner) };
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:230:29
[INFO] [stderr] |
[INFO] [stderr] 230 | pub inner: *mut htslib::bcf_hdr_t,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:234:36
[INFO] [stderr] |
[INFO] [stderr] 234 | pub fn new(inner: *mut htslib::bcf_hdr_t) -> Self {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf_hdr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:239:32
[INFO] [stderr] |
[INFO] [stderr] 239 | fn inner(&self) -> htslib::bcf_hdr_t {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_id2int` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:266:27
[INFO] [stderr] |
[INFO] [stderr] 266 | match htslib::bcf_hdr_id2int(
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_id2int` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:293:30
[INFO] [stderr] |
[INFO] [stderr] 293 | let id = htslib::bcf_hdr_id2int(
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_id2int` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:330:27
[INFO] [stderr] |
[INFO] [stderr] 330 | match htslib::bcf_hdr_id2int(
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_id2int` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:355:27
[INFO] [stderr] |
[INFO] [stderr] 355 | match htslib::bcf_hdr_id2int(
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf_hrec_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:380:35
[INFO] [stderr] |
[INFO] [stderr] 380 | fn parse_kv(rec: &htslib::bcf_hrec_t) -> LinearMap<String, String> {
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:440:37
[INFO] [stderr] |
[INFO] [stderr] 440 | inner: unsafe { htslib::bcf_hdr_dup(self.inner) },
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/header.rs:448:21
[INFO] [stderr] |
[INFO] [stderr] 448 | htslib::bcf_hdr_destroy(self.inner);
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:77:29
[INFO] [stderr] |
[INFO] [stderr] 77 | pub inner: *mut htslib::bcf1_t,
[INFO] [stderr] | ^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_init` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:86:33
[INFO] [stderr] |
[INFO] [stderr] 86 | let inner = htslib::bcf_init();
[INFO] [stderr] | ^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_unpack` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:88:21
[INFO] [stderr] |
[INFO] [stderr] 88 | htslib::bcf_unpack(inner, htslib::BCF_UN_ALL as i32);
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_unpack` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:100:26
[INFO] [stderr] |
[INFO] [stderr] 100 | unsafe { htslib::bcf_unpack(self.inner, htslib::BCF_UN_ALL as i32) };
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:119:37
[INFO] [stderr] |
[INFO] [stderr] 119 | pub fn inner(&self) -> &htslib::bcf1_t {
[INFO] [stderr] | ^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf1_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:129:49
[INFO] [stderr] |
[INFO] [stderr] 129 | pub fn inner_mut(&mut self) -> &mut htslib::bcf1_t {
[INFO] [stderr] | ^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_update_id` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:181:21
[INFO] [stderr] |
[INFO] [stderr] 181 | htslib::bcf_update_id(
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_update_id` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:197:21
[INFO] [stderr] |
[INFO] [stderr] 197 | htslib::bcf_update_id(
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_add_id` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:213:21
[INFO] [stderr] |
[INFO] [stderr] 213 | htslib::bcf_add_id(
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_update_filter` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:260:21
[INFO] [stderr] |
[INFO] [stderr] 260 | htslib::bcf_update_filter(
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_add_filter` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:279:21
[INFO] [stderr] |
[INFO] [stderr] 279 | htslib::bcf_add_filter(self.header().inner, self.inner, *flt_id as i32);
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_remove_filter` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:291:21
[INFO] [stderr] |
[INFO] [stderr] 291 | htslib::bcf_remove_filter(
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_unpack` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:304:26
[INFO] [stderr] |
[INFO] [stderr] 304 | unsafe { htslib::bcf_unpack(self.inner, htslib::BCF_UN_ALL as i32) };
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_update_alleles` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:324:21
[INFO] [stderr] |
[INFO] [stderr] 324 | htslib::bcf_update_alleles(
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_update_format` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:430:24
[INFO] [stderr] |
[INFO] [stderr] 430 | if htslib::bcf_update_format(
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_update_format_string` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:469:24
[INFO] [stderr] |
[INFO] [stderr] 469 | if htslib::bcf_update_format_string(
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_update_info` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:508:24
[INFO] [stderr] |
[INFO] [stderr] 508 | if htslib::bcf_update_info(
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_update_info` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:565:24
[INFO] [stderr] |
[INFO] [stderr] 565 | if htslib::bcf_update_info(
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_trim_alleles` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:583:32
[INFO] [stderr] |
[INFO] [stderr] 583 | match unsafe { htslib::bcf_trim_alleles(self.header().inner, self.inner) } {
[INFO] [stderr] | ^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `kbs_init` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:590:39
[INFO] [stderr] |
[INFO] [stderr] 590 | let rm_set = unsafe { htslib::kbs_init(remove.len()) };
[INFO] [stderr] | ^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `kbs_insert` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:595:29
[INFO] [stderr] |
[INFO] [stderr] 595 | htslib::kbs_insert(rm_set, i as i32);
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_remove_allele_set` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:600:36
[INFO] [stderr] |
[INFO] [stderr] 600 | let ret = unsafe { htslib::bcf_remove_allele_set(self.header().inner, self.inner, rm_set) };
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `kbs_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:603:21
[INFO] [stderr] |
[INFO] [stderr] 603 | htslib::kbs_destroy(rm_set);
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:705:26
[INFO] [stderr] |
[INFO] [stderr] 705 | unsafe { htslib::bcf_destroy(self.inner) };
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_get_info_values` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:723:21
[INFO] [stderr] |
[INFO] [stderr] 723 | htslib::bcf_get_info_values(
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf_fmt_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:801:25
[INFO] [stderr] |
[INFO] [stderr] 801 | inner: *mut htslib::bcf_fmt_t,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_get_fmt` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:808:21
[INFO] [stderr] |
[INFO] [stderr] 808 | htslib::bcf_get_fmt(
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf_fmt_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:821:37
[INFO] [stderr] |
[INFO] [stderr] 821 | pub fn inner(&self) -> &htslib::bcf_fmt_t {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf_fmt_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:825:49
[INFO] [stderr] |
[INFO] [stderr] 825 | pub fn inner_mut(&mut self) -> &mut htslib::bcf_fmt_t {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_get_format_values` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/record.rs:837:21
[INFO] [stderr] |
[INFO] [stderr] 837 | htslib::bcf_get_format_values(
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:65:25
[INFO] [stderr] |
[INFO] [stderr] 65 | inner: *mut htslib::htsFile,
[INFO] [stderr] | ^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:72:43
[INFO] [stderr] |
[INFO] [stderr] 72 | pub fn set_threads(hts_file: *mut htslib::htsFile, n_threads: usize) -> Result<(), ThreadingError> {
[INFO] [stderr] | ^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_set_threads` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:75:30
[INFO] [stderr] |
[INFO] [stderr] 75 | let r = unsafe { htslib::hts_set_threads(hts_file, n_threads as i32) };
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_read` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:104:39
[INFO] [stderr] |
[INFO] [stderr] 104 | let header = unsafe { htslib::bcf_hdr_read(htsfile) };
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_read` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:114:32
[INFO] [stderr] |
[INFO] [stderr] 114 | match unsafe { htslib::bcf_read(self.inner, self.header.inner, record.inner) } {
[INFO] [stderr] | ^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_unpack` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:118:29
[INFO] [stderr] |
[INFO] [stderr] 118 | htslib::bcf_unpack(record.inner_mut(), htslib::BCF_UN_ALL as i32);
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:149:21
[INFO] [stderr] |
[INFO] [stderr] 149 | htslib::hts_close(self.inner);
[INFO] [stderr] | ^^^^^^^^^ help: a function with a similar name exists: `hts_log`
[INFO] [stderr] |
[INFO] [stderr] ::: /opt/rustwide/target/x86_64-unknown-linux-gnu/debug/build/rust-htslib-d0696f9b366981ba/out/bindings.rs:85:27989
[INFO] [stderr] |
[INFO] [stderr] 85 | ... { pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stderr] | ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf_srs_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:158:25
[INFO] [stderr] |
[INFO] [stderr] 158 | inner: *mut htslib::bcf_srs_t,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_init` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:195:43
[INFO] [stderr] |
[INFO] [stderr] 195 | let ser_reader = unsafe { htslib::bcf_sr_init() };
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_set_opt` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:197:21
[INFO] [stderr] |
[INFO] [stderr] 197 | htslib::bcf_sr_set_opt(ser_reader, 0);
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_add_reader` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:200:29
[INFO] [stderr] |
[INFO] [stderr] 200 | if unsafe { htslib::bcf_sr_add_reader(ser_reader, path.as_ptr()) } >= 0 {
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:202:25
[INFO] [stderr] |
[INFO] [stderr] 202 | htslib::bcf_hdr_dup((*(*ser_reader).readers.offset(0)).header)
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_seek` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:226:29
[INFO] [stderr] |
[INFO] [stderr] 226 | if unsafe { htslib::bcf_sr_seek(self.inner, contig, start as i32) } != 0 {
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_next_line` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:237:32
[INFO] [stderr] |
[INFO] [stderr] 237 | match unsafe { htslib::bcf_sr_next_line(self.inner) } {
[INFO] [stderr] | ^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_copy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:252:29
[INFO] [stderr] |
[INFO] [stderr] 252 | htslib::bcf_copy(
[INFO] [stderr] | ^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_set_threads` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:284:34
[INFO] [stderr] |
[INFO] [stderr] 284 | let r = unsafe { htslib::bcf_sr_set_threads(self.inner, n_threads as i32) };
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:303:26
[INFO] [stderr] |
[INFO] [stderr] 303 | unsafe { htslib::bcf_sr_destroy(self.inner) };
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `bcf_srs_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:338:31
[INFO] [stderr] |
[INFO] [stderr] 338 | inner: *mut ::htslib::bcf_srs_t,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_init` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:351:44
[INFO] [stderr] |
[INFO] [stderr] 351 | let inner = unsafe { ::htslib::bcf_sr_init() };
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_set_opt` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:374:27
[INFO] [stderr] |
[INFO] [stderr] 374 | ::htslib::bcf_sr_set_opt(self.inner, 1, bitmask);
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_add_reader` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:384:44
[INFO] [stderr] |
[INFO] [stderr] 384 | unsafe { ::htslib::bcf_sr_add_reader(self.inner, p_cstring.as_ptr()) };
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:388:39
[INFO] [stderr] |
[INFO] [stderr] 388 | ... ::htslib::bcf_hdr_dup((*(*self.inner).readers.offset(i)).header)
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_remove_reader` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:406:31
[INFO] [stderr] |
[INFO] [stderr] 406 | ::htslib::bcf_sr_remove_reader(self.inner, idx as i32);
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_next_line` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:419:42
[INFO] [stderr] |
[INFO] [stderr] 419 | let num = unsafe { ::htslib::bcf_sr_next_line(self.inner) as u32 };
[INFO] [stderr] | ^^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_copy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:465:31
[INFO] [stderr] |
[INFO] [stderr] 465 | ::htslib::bcf_copy(
[INFO] [stderr] | ^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_seek` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:502:33
[INFO] [stderr] |
[INFO] [stderr] 502 | if unsafe { htslib::bcf_sr_seek(self.inner, contig, start as i32) } != 0 {
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_sr_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:513:32
[INFO] [stderr] |
[INFO] [stderr] 513 | unsafe { ::htslib::bcf_sr_destroy(self.inner) };
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:522:25
[INFO] [stderr] |
[INFO] [stderr] 522 | inner: *mut htslib::htsFile,
[INFO] [stderr] | ^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_write` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:588:26
[INFO] [stderr] |
[INFO] [stderr] 588 | unsafe { htslib::bcf_hdr_write(htsfile, header.inner) };
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_hdr_dup` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:592:25
[INFO] [stderr] |
[INFO] [stderr] 592 | htslib::bcf_hdr_dup(header.inner)
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_translate` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:617:21
[INFO] [stderr] |
[INFO] [stderr] 617 | htslib::bcf_translate(self.header.inner, record.header().inner, record.inner);
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_subset` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:630:25
[INFO] [stderr] |
[INFO] [stderr] 630 | htslib::bcf_subset(
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `bcf_write` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:647:29
[INFO] [stderr] |
[INFO] [stderr] 647 | if unsafe { htslib::bcf_write(self.inner, self.header.inner, record.inner) } == -1 {
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:668:21
[INFO] [stderr] |
[INFO] [stderr] 668 | htslib::hts_close(self.inner);
[INFO] [stderr] | ^^^^^^^^^ help: a function with a similar name exists: `hts_log`
[INFO] [stderr] |
[INFO] [stderr] ::: /opt/rustwide/target/x86_64-unknown-linux-gnu/debug/build/rust-htslib-d0696f9b366981ba/out/bindings.rs:85:27989
[INFO] [stderr] |
[INFO] [stderr] 85 | ... { pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stderr] | ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:731:62
[INFO] [stderr] |
[INFO] [stderr] 731 | fn bcf_open(path: &[u8], mode: &[u8]) -> Result<*mut htslib::htsFile, BCFError> {
[INFO] [stderr] | ^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_open` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/bcf/mod.rs:733:32
[INFO] [stderr] |
[INFO] [stderr] 733 | let ret = unsafe { htslib::hts_open(p.as_ptr(), ffi::CString::new(mode).unwrap().as_ptr()) };
[INFO] [stderr] | ^^^^^^^^ not found in `htslib`
[INFO] [stderr] |
[INFO] [stderr] note: function `sam::hts_open` exists but is inaccessible
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/sam/mod.rs:25:1
[INFO] [stderr] |
[INFO] [stderr] 25 | fn hts_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::htsFile, WriterError> {
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ not accessible
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/sam/mod.rs:20:21
[INFO] [stderr] |
[INFO] [stderr] 20 | f: *mut htslib::htsFile,
[INFO] [stderr] | ^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/sam/mod.rs:25:67
[INFO] [stderr] |
[INFO] [stderr] 25 | fn hts_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::htsFile, WriterError> {
[INFO] [stderr] | ^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_open` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/sam/mod.rs:26:32
[INFO] [stderr] |
[INFO] [stderr] 26 | let ret = unsafe { htslib::hts_open(path.as_ptr(), ffi::CString::new(mode).unwrap().as_ptr()) };
[INFO] [stderr] | ^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `sam_hdr_write` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/sam/mod.rs:66:21
[INFO] [stderr] |
[INFO] [stderr] 66 | htslib::sam_hdr_write(f, &header_view.inner());
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `sam_write1` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/sam/mod.rs:80:29
[INFO] [stderr] |
[INFO] [stderr] 80 | if unsafe { htslib::sam_write1(self.f, &self.header.inner(), record.inner) } == -1 {
[INFO] [stderr] | ^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/sam/mod.rs:91:21
[INFO] [stderr] |
[INFO] [stderr] 91 | htslib::hts_close(self.f);
[INFO] [stderr] | ^^^^^^^^^ help: a function with a similar name exists: `hts_log`
[INFO] [stderr] |
[INFO] [stderr] ::: /opt/rustwide/target/x86_64-unknown-linux-gnu/debug/build/rust-htslib-d0696f9b366981ba/out/bindings.rs:85:27989
[INFO] [stderr] |
[INFO] [stderr] 85 | ... { pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stderr] | ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `htsFile` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:89:28
[INFO] [stderr] |
[INFO] [stderr] 89 | hts_file: *mut htslib::htsFile,
[INFO] [stderr] | ^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `tbx_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:93:23
[INFO] [stderr] |
[INFO] [stderr] 93 | tbx: *mut htslib::tbx_t,
[INFO] [stderr] | ^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0412]: cannot find type `hts_itr_t` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:97:30
[INFO] [stderr] |
[INFO] [stderr] 97 | itr: Option<*mut htslib::hts_itr_t>,
[INFO] [stderr] | ^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_open` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:138:30
[INFO] [stderr] |
[INFO] [stderr] 138 | unsafe { htslib::hts_open(path.as_ptr(), ffi::CString::new("r").unwrap().as_ptr()) };
[INFO] [stderr] | ^^^^^^^^ not found in `htslib`
[INFO] [stderr] |
[INFO] [stderr] note: function `sam::hts_open` exists but is inaccessible
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/sam/mod.rs:25:1
[INFO] [stderr] |
[INFO] [stderr] 25 | fn hts_open(path: &ffi::CStr, mode: &[u8]) -> Result<*mut htslib::htsFile, WriterError> {
[INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ not accessible
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_get_format` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:139:45
[INFO] [stderr] |
[INFO] [stderr] 139 | let hts_format = unsafe { (*htslib::hts_get_format(hts_file)).format };
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `tbx_index_load` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:140:36
[INFO] [stderr] |
[INFO] [stderr] 140 | let tbx = unsafe { htslib::tbx_index_load(path.as_ptr()) };
[INFO] [stderr] | ^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_getline` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:148:27
[INFO] [stderr] |
[INFO] [stderr] 148 | while htslib::hts_getline(hts_file, KS_SEP_LINE, &mut buf) >= 0 {
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `tbx_name2id` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:178:21
[INFO] [stderr] |
[INFO] [stderr] 178 | htslib::tbx_name2id(
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_itr_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:198:25
[INFO] [stderr] |
[INFO] [stderr] 198 | htslib::hts_itr_destroy(itr);
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_itr_query` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:202:21
[INFO] [stderr] |
[INFO] [stderr] 202 | htslib::hts_itr_query(
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find value `tbx_readrec` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:207:30
[INFO] [stderr] |
[INFO] [stderr] 207 | Some(htslib::tbx_readrec),
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `tbx_seqnames` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:224:37
[INFO] [stderr] |
[INFO] [stderr] 224 | let seqs = unsafe { htslib::tbx_seqnames(self.tbx, &mut nseq) };
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_set_threads` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:250:34
[INFO] [stderr] |
[INFO] [stderr] 250 | let r = unsafe { htslib::hts_set_threads(self.hts_file, n_threads as i32) };
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_itr_next` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:271:33
[INFO] [stderr] |
[INFO] [stderr] 271 | htslib::hts_itr_next(
[INFO] [stderr] | ^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_get_bgzfp` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:272:37
[INFO] [stderr] |
[INFO] [stderr] 272 | ... htslib::hts_get_bgzfp(self.hts_file),
[INFO] [stderr] | ^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_itr_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:314:25
[INFO] [stderr] |
[INFO] [stderr] 314 | htslib::hts_itr_destroy(self.itr.unwrap());
[INFO] [stderr] | ^^^^^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `tbx_destroy` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:316:21
[INFO] [stderr] |
[INFO] [stderr] 316 | htslib::tbx_destroy(self.tbx);
[INFO] [stderr] | ^^^^^^^^^^^ not found in `htslib`
[INFO] [stderr]
[INFO] [stderr] error[E0425]: cannot find function `hts_close` in module `htslib`
[INFO] [stderr] --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/rust-htslib-0.22.0/src/tbx/mod.rs:317:21
[INFO] [stderr] |
[INFO] [stderr] 317 | htslib::hts_close(self.hts_file);
[INFO] [stderr] | ^^^^^^^^^ help: a function with a similar name exists: `hts_log`
[INFO] [stderr] |
[INFO] [stderr] ::: /opt/rustwide/target/x86_64-unknown-linux-gnu/debug/build/rust-htslib-d0696f9b366981ba/out/bindings.rs:85:27989
[INFO] [stderr] |
[INFO] [stderr] 85 | ... { pub fn hts_log ( severity : htsLogLevel , context : * const :: std :: os :: raw :: c_char , format : * const :: std :: os :: raw :: c_char , ... ) ; } ...
[INFO] [stderr] | ---------------------------------------------------------------------------------------------------------------------------------------------------- similarly named function `hts_log` defined here
[INFO] [stderr]
[INFO] [stderr] Some errors have detailed explanations: E0412, E0425.
[INFO] [stderr] For more information about an error, try `rustc --explain E0412`.
[INFO] [stderr] error: could not compile `rust-htslib` (lib) due to 187 previous errors
[INFO] running `Command { std: "docker" "inspect" "dea7405491a88d939126eb5d793a82378e62a05282deaa1509bbb1f325d5de24", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dea7405491a88d939126eb5d793a82378e62a05282deaa1509bbb1f325d5de24", kill_on_drop: false }`
[INFO] [stdout] dea7405491a88d939126eb5d793a82378e62a05282deaa1509bbb1f325d5de24