[−][src]Crate kair

Constraint-Based Reconstruction and Analysis. It uses the rust_sbml to read a SBML document and translates it into a LP formulation using lp_modeler

COBRA methods available

Examples

Read and optimize e_coli_core model

use kair::ModelLP;
use std::str::FromStr;

let file_str = std::fs::read_to_string("examples/EcoliCore.xml").unwrap();
let model = ModelLP::from_str(&file_str).unwrap();
println!(
    "Model has {:?} constraints and {:?} variables",
    &model.constraints.len(),
    &model.variables.len()
);
for (name, val) in model.optimize().unwrap().iter() {
    println!("{} = {}", name, val)
}

Additional links

Structs

ModelLP

LP problem as a Flux Balance Analysis formulation.

Traits

Fbc

Indicate that the struct can be translated to a flux balance variable (generally, reactions)

Functions

fba

Optimize the model according to Flux Balance Analysis (FBA). FBA: https://pubmed.ncbi.nlm.nih.gov/20212490/