Enum hpo::similarity::StandardCombiner

pub enum StandardCombiner {
    FunSimAvg,
    FunSimMax,
    Bwa,
}

Default implementations for combining similarity scores of 2 HpoSets

Variants

FunSimAvg

funSimAvg algorithm from Schlicker A, et. al., BMC Bioinf (2006)

FunSimMax

funSimMax algorithm from Schlicker A, et. al., BMC Bioinf (2006)

Bwa

BMA algorithm from Wang JZ, et. al., Bioinformatics (2007)

Trait Implementations

impl Clone for StandardCombiner

fn clone(&self) -> StandardCombiner

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for StandardCombiner

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for StandardCombiner

fn default() -> Self

Returns the “default value” for a type.

impl Hash for StandardCombiner

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq for StandardCombiner

fn eq(&self, other: &StandardCombiner) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl SimilarityCombiner for StandardCombiner

fn combine(&self, m: &Matrix<'_, f32>) -> f32

This method implements the actual logic to calculate a single similarity score from a Matrix of term - term similarity scores.

fn calculate(&self, m: &Matrix<'_, f32>) -> f32

this method is called by GroupSimilarity to combine individual term - term similarity scores into a single score for the group - group similarity

fn row_maxes(&self, m: &Matrix<'_, f32>) -> Vec<f32>

Returns the maximum values of each row

fn col_maxes(&self, m: &Matrix<'_, f32>) -> Vec<f32>

Returns the maximum values of each column

fn dim_f32(&self, m: &Matrix<'_, f32>) -> (f32, f32)

Returns the dimenension of the Matrix, (rows, columns)

impl TryFrom<&str> for StandardCombiner

type Error = HpoError

The type returned in the event of a conversion error.

fn try_from(value: &str) -> Result<Self, Self::Error>

Performs the conversion.

impl Copy for StandardCombiner

impl Eq for StandardCombiner

impl StructuralPartialEq for StandardCombiner