Module gfa::gfa

source · [−]

Re-exports

pub use self::orientation::*;

pub use self::traits::*;

Modules

name_conversion

orientation

traits

Structs

Containment

GFA

This module defines the various GFA line types, the GFA object, and some utility functions and types. Simple representation of a parsed GFA file, using a Vec to store each separate GFA line type.

Header

The header line of a GFA graph

Link

Path

The step list that the path actually consists of is an unparsed Vec to keep memory down; use path.iter() to get an iterator over the parsed path segments and orientations.

Segment

A segment in a GFA graph. Generic over the name type, but currently the parser is only defined for N = Vec

Enums

Line

Enum containing the different kinds of GFA lines.

LineRef