dynamics 0.2.2

Molecular dynamics
Documentation

Build #4174406 2026-08-19 17:57:25

# rustc version rustc 1.100.0-nightly (e71c0f1e3 2026-08-18)

# docs.rs version docsrs 0.0.0 (b67fb7d1993e3c70fff4d05e2bc482bd9d0d774f 2026-08-13 )

# build log [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "DOCS_RS=1" "-w" "/opt/rustwide/workdir" "--user" "1001:1001" "db178e06cca3181fcacb1e28b22665e310f00a7793599460b3648d96366e6eae" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--emit=html-non-static-files\", \"--resource-suffix\", \"-20260818-1.100.0-nightly-e71c0f1e3\", \"--static-root-path\", \"/-/rustdoc.static/\", \"--cap-lints\", \"warn\", \"--extern-html-root-takes-precedence\"]" "--offline" "-Zunstable-options" "--config=doc.extern-map.registries.crates-io=\"https://docs.rs/{pkg_name}/{version}/x86_64-unknown-linux-gnu\"" "-j6" "--target" "x86_64-unknown-linux-gnu" "-Zrustdoc-scrape-examples", kill_on_drop: false }` [INFO] [stderr] Checking dynamics v0.2.2 (/opt/rustwide/workdir) [INFO] [stderr] Scraping dynamics v0.2.2 (/opt/rustwide/workdir) [INFO] [stderr] Documenting dynamics v0.2.2 (/opt/rustwide/workdir) [INFO] [stderr] warning: unresolved link to `ignore` [INFO] [stderr] --> src/config.rs:80:77 [INFO] [stderr] | [INFO] [stderr] 80 | /// Generate one with the `generate_water_init_template` test (marked #[ignore]). [INFO] [stderr] | ^^^^^^ no item named `ignore` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `S` [INFO] [stderr] --> src/non_bonded.rs:439:33 [INFO] [stderr] | [INFO] [stderr] 439 | /// We use the MD-standard [S]PME approach to handle approximated Coulomb forces. This function [INFO] [stderr] | ^ no item named `S` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: this URL is not a hyperlink [INFO] [stderr] --> src/lib.rs:26:83 [INFO] [stderr] | [INFO] [stderr] 26 | //! Amber: ff19SB for proteins, gaff2 for ligands. (Based on recommendations from https://ambermd.org/AmberModels.php). [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: bare URLs are not automatically turned into clickable links [INFO] [stderr] = note: `#[warn(rustdoc::bare_urls)]` on by default [INFO] [stderr] help: use an automatic link instead [INFO] [stderr] | [INFO] [stderr] 26 | //! Amber: ff19SB for proteins, gaff2 for ligands. (Based on recommendations from <https://ambermd.org/AmberModels.php>). [INFO] [stderr] | + + [INFO] [stderr] [INFO] [stderr] warning: this URL is not a hyperlink [INFO] [stderr] --> src/add_hydrogens/mod.rs:10:68 [INFO] [stderr] | [INFO] [stderr] 10 | //! This page has atom labels for all AAs; use it as a ref and QC: https://ccpn.ac.uk/manual/v3/NEFAtomNames.html [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: bare URLs are not automatically turned into clickable links [INFO] [stderr] help: use an automatic link instead [INFO] [stderr] | [INFO] [stderr] 10 | //! This page has atom labels for all AAs; use it as a ref and QC: <https://ccpn.ac.uk/manual/v3/NEFAtomNames.html> [INFO] [stderr] | + + [INFO] [stderr] [INFO] [stderr] warning: this URL is not a hyperlink [INFO] [stderr] --> src/param_inference/mod.rs:8:31 [INFO] [stderr] | [INFO] [stderr] 8 | //! Description of its parts: https://ambermd.org/antechamber/ac.html#am1bcc [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: bare URLs are not automatically turned into clickable links [INFO] [stderr] help: use an automatic link instead [INFO] [stderr] | [INFO] [stderr] 8 | //! Description of its parts: <https://ambermd.org/antechamber/ac.html#am1bcc> [INFO] [stderr] | + + [INFO] [stderr] [INFO] [stderr] warning: `dynamics` (lib doc) generated 5 warnings (run `cargo fix --lib -p dynamics` to apply 3 suggestions) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2.79s [INFO] [stderr] Generated /opt/rustwide/target/x86_64-unknown-linux-gnu/doc/dynamics/index.html [INFO] running `Command { std: "docker" "inspect" "db178e06cca3181fcacb1e28b22665e310f00a7793599460b3648d96366e6eae", kill_on_drop: false }`