# rustc version rustc 1.99.0-nightly (3659db0d3 2026-07-05)
# docs.rs version docsrs 0.0.0 (964c90a45859fd8f9076e3cbe58470a5a4f4d4f7 2026-07-01 )
# build log [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "DOCS_RS=1" "-w" "/opt/rustwide/workdir" "--user" "1001:1001" "0dc7469f5ed7e8e0561c8f82917f194e502132ecde2ee0ca121fcfe0ef5961a2" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--emit=invocation-specific\", \"--resource-suffix\", \"-20260705-1.99.0-nightly-3659db0d3\", \"--static-root-path\", \"/-/rustdoc.static/\", \"--cap-lints\", \"warn\", \"--extern-html-root-takes-precedence\"]" "--offline" "-Zunstable-options" "--config=doc.extern-map.registries.crates-io=\"https://docs.rs/{pkg_name}/{version}/x86_64-unknown-linux-gnu\"" "-Zrustdoc-scrape-examples" "-j6" "--target" "x86_64-unknown-linux-gnu", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `barostat::PRESSURE_DEFAULT` [INFO] [stderr] --> src/config.rs:16:5 [INFO] [stderr] | [INFO] [stderr] 16 | barostat::PRESSURE_DEFAULT, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `HashSet` [INFO] [stderr] --> src/params.rs:7:28 [INFO] [stderr] | [INFO] [stderr] 7 | collections::{HashMap, HashSet}, [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `AngleBendingParams`, `BondStretchingParams`, `DihedralParams`, `LjParams`, and `MassParams` [INFO] [stderr] --> src/params.rs:16:9 [INFO] [stderr] | [INFO] [stderr] 16 | AngleBendingParams, BondStretchingParams, ChargeParams, ChargeParamsProtein, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 17 | DihedralParams, ForceFieldParams, LjParams, MassParams, NucleotideTemplate, [INFO] [stderr] | ^^^^^^^^^^^^^^ ^^^^^^^^ ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `AngleBendingParams`, `BondStretchingParams`, `ForceFieldParamsIndexed`, `LjParams`, and `MassParams` [INFO] [stderr] --> src/prep.rs:31:9 [INFO] [stderr] | [INFO] [stderr] 31 | AngleBendingParams, BondStretchingParams, ForceFieldParams, ForceFieldParamsIndexed, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] 32 | LjParams, MassParams, [INFO] [stderr] | ^^^^^^^^ ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/prep.rs:35:5 [INFO] [stderr] | [INFO] [stderr] 35 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `na_seq::Element::Hydrogen` [INFO] [stderr] --> src/prep.rs:36:5 [INFO] [stderr] | [INFO] [stderr] 36 | use na_seq::Element::Hydrogen; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `AtomDynamics` and `ParamError` [INFO] [stderr] --> src/prep.rs:38:13 [INFO] [stderr] | [INFO] [stderr] 38 | use crate::{AtomDynamics, MdState, ParamError}; [INFO] [stderr] | ^^^^^^^^^^^^ ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `Virial` [INFO] [stderr] --> src/solvent/settle.rs:14:24 [INFO] [stderr] | [INFO] [stderr] 14 | barostat::{SimBox, Virial}, [INFO] [stderr] | ^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unreachable statement [INFO] [stderr] --> src/barostat.rs:335:9 [INFO] [stderr] | [INFO] [stderr] 333 | return; [INFO] [stderr] | ------ any code following this expression is unreachable [INFO] [stderr] 334 | [INFO] [stderr] 335 | let vol_a3 = simbox.volume() as f64; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ unreachable statement [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unreachable_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `dt_ps` [INFO] [stderr] --> src/barostat.rs:324:9 [INFO] [stderr] | [INFO] [stderr] 324 | dt_ps: f64, [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_dt_ps` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `p_inst_bar` [INFO] [stderr] --> src/barostat.rs:325:9 [INFO] [stderr] | [INFO] [stderr] 325 | p_inst_bar: f64, [INFO] [stderr] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_p_inst_bar` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `temp_k` [INFO] [stderr] --> src/barostat.rs:326:9 [INFO] [stderr] | [INFO] [stderr] 326 | temp_k: f64, [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_temp_k` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `cfg` [INFO] [stderr] --> src/barostat.rs:327:9 [INFO] [stderr] | [INFO] [stderr] 327 | cfg: &BarostatCfg, [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_cfg` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `simbox` [INFO] [stderr] --> src/barostat.rs:328:9 [INFO] [stderr] | [INFO] [stderr] 328 | simbox: &mut SimBox, [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_simbox` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `atoms_dyn` [INFO] [stderr] --> src/barostat.rs:329:9 [INFO] [stderr] | [INFO] [stderr] 329 | atoms_dyn: &mut [AtomDynamics], [INFO] [stderr] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_atoms_dyn` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `waters` [INFO] [stderr] --> src/barostat.rs:330:9 [INFO] [stderr] | [INFO] [stderr] 330 | waters: &mut [WaterMol], [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_waters` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `drj` [INFO] [stderr] --> src/bonded.rs:192:17 [INFO] [stderr] | [INFO] [stderr] 192 | let drj = rj_new - unconstrained_pos[j]; [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_drj` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `dt` [INFO] [stderr] --> src/bonded.rs:288:47 [INFO] [stderr] | [INFO] [stderr] 288 | pub(crate) fn rattle_hydrogens(&mut self, dt: f32) { [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_dt` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/config.rs:255:13 [INFO] [stderr] | [INFO] [stderr] 255 | let mut overrides = MdOverrides::default(); [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `nstlog` [INFO] [stderr] --> src/config.rs:258:13 [INFO] [stderr] | [INFO] [stderr] 258 | let nstlog = p.output_control.nstlog.unwrap_or(0); [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_nstlog` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `n` [INFO] [stderr] --> src/alchemical.rs:75:9 [INFO] [stderr] | [INFO] [stderr] 75 | let n = snapshots.len() as f64; [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_n` [INFO] [stderr] [INFO] [stderr] warning: constant `RB` is never used [INFO] [stderr] --> src/solvent/settle.rs:42:7 [INFO] [stderr] | [INFO] [stderr] 42 | const RB: f32 = 0.6856075890450577; // O_H_R * (H_O_H_θ / 2.).sin() [INFO] [stderr] | ^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: constant `RC` is never used [INFO] [stderr] --> src/solvent/settle.rs:43:7 [INFO] [stderr] | [INFO] [stderr] 43 | const RC: f32 = RA * (2.0 * H_MASS) / (O_MASS + 2.0 * H_MASS); [INFO] [stderr] | ^^ [INFO] [stderr] [INFO] [stderr] warning: struct `SettleParams` is never constructed [INFO] [stderr] --> src/solvent/settle.rs:223:12 [INFO] [stderr] | [INFO] [stderr] 223 | pub struct SettleParams { [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: associated function `new` is never used [INFO] [stderr] --> src/solvent/settle.rs:234:12 [INFO] [stderr] | [INFO] [stderr] 233 | impl SettleParams { [INFO] [stderr] | ----------------- associated function in this implementation [INFO] [stderr] 234 | pub fn new() -> Self { [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: `dynamics` (lib) generated 25 warnings (run `cargo fix --lib -p dynamics` to apply 20 suggestions) [INFO] [stderr] Scraping dynamics v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: failed to scan example "lig_and_protein" in package `dynamics` for example code usage [INFO] [stderr] Try running with `--verbose` to see the error message. [INFO] [stderr] If an example should not be scanned, then consider adding `doc-scrape-examples = false` to its `[[example]]` definition in Cargo.toml [INFO] [stderr] warning: `dynamics` (example "lig_and_protein") generated 1 warning [INFO] [stderr] warning: failed to scan example "minimal" in package `dynamics` for example code usage [INFO] [stderr] Try running with `--verbose` to see the error message. [INFO] [stderr] If an example should not be scanned, then consider adding `doc-scrape-examples = false` to its `[[example]]` definition in Cargo.toml [INFO] [stderr] warning: `dynamics` (example "minimal") generated 1 warning [INFO] [stderr] Documenting dynamics v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] warning: unresolved link to `ignore` [INFO] [stderr] --> src/config.rs:58:77 [INFO] [stderr] | [INFO] [stderr] 58 | /// Generate one with the `generate_water_init_template` test (marked #[ignore]). [INFO] [stderr] | ^^^^^^ no item named `ignore` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `S` [INFO] [stderr] --> src/non_bonded.rs:400:33 [INFO] [stderr] | [INFO] [stderr] 400 | /// We use the MD-standard [S]PME approach to handle approximated Coulomb forces. This function [INFO] [stderr] | ^ no item named `S` in scope [INFO] [stderr] | [INFO] [stderr] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stderr] [INFO] [stderr] warning: unresolved link to `Snapshot::dh_dl` [INFO] [stderr] --> src/alchemical.rs:15:38 [INFO] [stderr] | [INFO] [stderr] 15 | //! This is stored per frame in [`Snapshot::dh_dl`]. [INFO] [stderr] | ^^^^^^^^^^^^^^^ the struct `Snapshot` has no field or associated item named `dh_dl` [INFO] [stderr] [INFO] [stderr] warning: this URL is not a hyperlink [INFO] [stderr] --> src/lib.rs:26:83 [INFO] [stderr] | [INFO] [stderr] 26 | //! Amber: ff19SB for proteins, gaff2 for ligands. (Based on recommendations from https://ambermd.org/AmberModels.php). [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: bare URLs are not automatically turned into clickable links [INFO] [stderr] = note: `#[warn(rustdoc::bare_urls)]` on by default [INFO] [stderr] help: use an automatic link instead [INFO] [stderr] | [INFO] [stderr] 26 | //! Amber: ff19SB for proteins, gaff2 for ligands. (Based on recommendations from <https://ambermd.org/AmberModels.php>). [INFO] [stderr] | + + [INFO] [stderr] [INFO] [stderr] warning: this URL is not a hyperlink [INFO] [stderr] --> src/add_hydrogens/mod.rs:10:68 [INFO] [stderr] | [INFO] [stderr] 10 | //! This page has atom labels for all AAs; use it as a ref and QC: https://ccpn.ac.uk/manual/v3/NEFAtomNames.html [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: bare URLs are not automatically turned into clickable links [INFO] [stderr] help: use an automatic link instead [INFO] [stderr] | [INFO] [stderr] 10 | //! This page has atom labels for all AAs; use it as a ref and QC: <https://ccpn.ac.uk/manual/v3/NEFAtomNames.html> [INFO] [stderr] | + + [INFO] [stderr] [INFO] [stderr] warning: this URL is not a hyperlink [INFO] [stderr] --> src/param_inference/mod.rs:8:31 [INFO] [stderr] | [INFO] [stderr] 8 | //! Description of its parts: https://ambermd.org/antechamber/ac.html#am1bcc [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: bare URLs are not automatically turned into clickable links [INFO] [stderr] help: use an automatic link instead [INFO] [stderr] | [INFO] [stderr] 8 | //! Description of its parts: <https://ambermd.org/antechamber/ac.html#am1bcc> [INFO] [stderr] | + + [INFO] [stderr] [INFO] [stderr] warning: `dynamics` (lib doc) generated 6 warnings (run `cargo fix --lib -p dynamics` to apply 3 suggestions) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3.00s [INFO] [stderr] Generated /opt/rustwide/target/x86_64-unknown-linux-gnu/doc/dynamics/index.html [INFO] running `Command { std: "docker" "inspect" "0dc7469f5ed7e8e0561c8f82917f194e502132ecde2ee0ca121fcfe0ef5961a2", kill_on_drop: false }`