[−][src]Trait d4_hts::alignment::AlignmentReader

pub trait AlignmentReader<'a> {
    fn start(&self) -> (u32, u32);

    fn get_file(&self) -> &'a BamFile;

    fn next(
        &self, 
        buf: *mut bam1_t
    ) -> Result<Option<Alignment<'a>>, AlignmentError>;

    fn to_alignment_iter(self) -> AlignmentIter<'a, Self>ⓘ
Notable traits for AlignmentIter<'a, R>
impl<'a, R: AlignmentReader<'a>> Iterator for AlignmentIter<'a, R>    type Item = Result<Alignment<'a>, AlignmentError>;

    where
        Self: Sized,
    { ... }
}

Required methods

fn start(&self) -> (u32, u32)

fn get_file(&self) -> &'a BamFile

fn next(
    &self,
    buf: *mut bam1_t
) -> Result<Option<Alignment<'a>>, AlignmentError>

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Provided methods

fn to_alignment_iter(self) -> AlignmentIter<'a, Self>ⓘ

Notable traits for AlignmentIter<'a, R>

impl<'a, R: AlignmentReader<'a>> Iterator for AlignmentIter<'a, R> type Item = Result<Alignment<'a>, AlignmentError>;
 where
    Self: Sized, 

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Implementors

impl<'a> AlignmentReader<'a> for &'a BamFile[src]

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